Locus 2553

Sequence ID 3L_DroMel_CAF1
Location 7,148,363 – 7,148,467
Length 104
Max. P 0.796045
window3962

overview

Window 2

Location 7,148,363 – 7,148,467
Length 104
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 91.86
Mean single sequence MFE -24.42
Consensus MFE -21.65
Energy contribution -22.05
Covariance contribution 0.40
Combinations/Pair 1.23
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.60
SVM RNA-class probability 0.796045
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7148363 104 - 23771897
AACACUCAGCUAUCCCCGUUCGACAUUUAUCACUC-AAAUCAAAUAAACUUGGGGAUGGCUUGGAUCCUUGGACGAAAGUUUAAGACCCCAGUGAUUUGGUAUGA
..(((..(((((((((((.................-..............)))))))))))(((...(((((((....)))))))...))))))........... ( -30.88)
>DroSec_CAF1 11045 102 - 1
AGCACUCAGCUAUCCCCGUUCGACAUUUAUCACUC-AAAUCAAAUAAACUUGGGUAUGGCUU--AUCCUUGGACGAAAGUUUAAGACCCCAGUGAUUUGGUAUGA
(((.....)))......................((-(.(((((((..(((.((((.......--...(((((((....))))))))))).))).))))))).))) ( -22.90)
>DroSim_CAF1 9592 102 - 1
AGCACUCAGCUAUCCCCGUUCGACAUUUAUCACUC-AAAUCAAAUAAACUUGGGUAUGGCUU--AUCCUUGGACGAAAGUUUAAGACCCCAGUGAUUUGGUAUGA
(((.....)))......................((-(.(((((((..(((.((((.......--...(((((((....))))))))))).))).))))))).))) ( -22.90)
>DroEre_CAF1 15757 102 - 1
AGCACUCGGCCAUCCCCGUUCGACAUUUAUCACUC-AAAUCAAAUAAACUUAGGGUUGGUUU--AUCCUUGGACGAAAGUUUAAGAGCCAAGUGACUUGGUAUGA
..((((.(((.........................-.......(((((((.......)))))--)).(((((((....))))))).))).))))........... ( -22.00)
>DroYak_CAF1 13234 103 - 1
AGCAUUCAGCUAUCUCCGUUCGACAUUUAUCACUUGAAAUCAAAUAAACUUAGGGUUGGCUU--AGCCUUGGACGAAAGUUUAAGACUCAAGUGAUUUGCUAUGA
((((.(((((.......))).)).....(((((((((............(((((.....)))--)).(((((((....)))))))..))))))))).)))).... ( -23.40)
>consensus
AGCACUCAGCUAUCCCCGUUCGACAUUUAUCACUC_AAAUCAAAUAAACUUGGGGAUGGCUU__AUCCUUGGACGAAAGUUUAAGACCCCAGUGAUUUGGUAUGA
..((((.(((((((((((................................)))))))))))......(((((((....))))))).....))))........... (-21.65 = -22.05 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:30 2006