Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,142,098 – 7,142,212 |
Length | 114 |
Max. P | 0.599223 |
Location | 7,142,098 – 7,142,212 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.93 |
Mean single sequence MFE | -36.47 |
Consensus MFE | -26.57 |
Energy contribution | -26.60 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.25 |
Mean z-score | -0.95 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7142098 114 - 23771897 CCGUGGACGCAAAUGUGGAGCGCAAUCGCCACAUUAUGCUGCAUUGCCAGGCACAGGGUGUUCCCACACCCAGCAUAGUGUGGAAGAAGGCUACAGGUUAGACA-CUGCAAAUUA----- ..(..(...(.(((.((.(((.(.....((((((((((((((........))...((((((....)))))))))))))))))).....)))).)).))).)...-)..)......----- ( -39.70) >DroVir_CAF1 13601 105 - 1 CCGCCGAUGCAAAUGUGGAACGCAAUCGUCACAUCAUGUUGCAUUGUCAGGCACAGGGCGUGCCGACGCCCAGCAUUGUGUGGAAAAAGGCGACAGGUCAGAAA-U-------------- ((((((((((...((((....(((((.((.((.....)).)))))))....))))((((((....)))))).)))))).)))).....(((.....))).....-.-------------- ( -36.00) >DroGri_CAF1 15572 108 - 1 CUGCCGACGCGAAUGUGGAGCGCAACCGUCACAUAAUGUUGCAUUGUCAGGCGCAGGGAGUGCCCACGCCCAGCAUUGUAUGGAAAAAGGCUACAGGUUAGAUA-UACU----------- ..((((.(((.........))))..((((...(((((((((........((((..(((....))).))))))))))))))))).....))).............-....----------- ( -28.20) >DroWil_CAF1 50872 110 - 1 CGGCCGAUGCGAAUGUCGAACGGAAUCGCCACAUAAUGUUGCAUUGUCAGGCGCAGGGCGUGCCCACGCCCAGCAUUGUGUGGAAAAAGGCAACGGGUAGGUUUAAUAUC---------- ((..((((......))))..))(((((.((((((((((((((........))...((((((....)))))))))))))))))).....(....).....)))))......---------- ( -39.70) >DroMoj_CAF1 15090 119 - 1 CAGCCGACGCGAAUGUGGAGCGCAAUCGUCACAUAAUGCUGCACUGCCAGGCGCAGGGCGUGCCCACGCCCAGUAUCGUGUGGAAGAAGGCAACAGGUCAGAUA-UGUCAAUUCGAUUGA ..(((..(((((.((((...)))).))))((((..(((((((.((....)).)).((((((....)))))))))))..))))...)..)))....((((..((.-.....))..)))).. ( -38.70) >DroAna_CAF1 7632 113 - 1 CCGUUGAUGCGAAUGUGGAGCGCAACCGCCACAUAAUGUUGCACUGCCAGGCUCAGGGUGUACCCACGCCCAGUAUAGUGUGGAAAAAGGCCACAGGUAAGCCG-AGCACUA-CA----- ..((.(.(((((.((((..(((....)))..))))...))))).(((..((((..((((((....))))))..(((..(((((.......))))).))))))).-.)))).)-).----- ( -36.50) >consensus CCGCCGACGCGAAUGUGGAGCGCAAUCGCCACAUAAUGUUGCAUUGCCAGGCGCAGGGCGUGCCCACGCCCAGCAUUGUGUGGAAAAAGGCAACAGGUAAGAUA_UGCC___________ ..(((...((((.(((.....))).))))(((((.(((((((........))...((((((....))))))))))).)))))......)))............................. (-26.57 = -26.60 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:28 2006