Locus 2550

Sequence ID 3L_DroMel_CAF1
Location 7,141,767 – 7,141,864
Length 97
Max. P 0.595514
window3959

overview

Window 9

Location 7,141,767 – 7,141,864
Length 97
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 83.00
Mean single sequence MFE -25.68
Consensus MFE -18.36
Energy contribution -18.58
Covariance contribution 0.22
Combinations/Pair 1.14
Mean z-score -1.71
Structure conservation index 0.71
SVM decision value 0.12
SVM RNA-class probability 0.595514
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7141767 97 + 23771897
AU----CAUCAUUUUAG-CCAAAUAUACUCACAGUUCACUUUCAGCUGGAUGACCUUUCCGAUGCCGGUGCCGAUGCCAUUGUUGGCCUGGCACAGAUAGAA
.(----((((((((...-..)))).......(((((.......)))))))))).((.((.(.((((((.((((((......))))))))))))).)).)).. ( -26.90)
>DroPse_CAF1 6174 86 + 1
-------------CUCG-GCAGA--UACUCACAGUUCACUUUCAGUUGUAUGACCUUUCCGAUGCCAGUGCCGAUGCCAUUGUUGGCUUGGCACAGAUAGAA
-------------.(((-(((((--.((.....))))....(((......))).........)))).(((((((.((((....))))))))))).....)). ( -25.20)
>DroEre_CAF1 8879 87 + 1
------------UUCUG-CCAAA--UACUCACAGUUCACUUUCAGCUGAAUGACCUUUCCGAUGCCGGUGCCGAUGCCAUUGUUGGCCUGGCACAGAUAGAA
------------.((((-.....--......(((((.......)))))..............((((((.((((((......))))))))))))))))..... ( -24.50)
>DroMoj_CAF1 14695 96 + 1
AUCUAGCA---C-AUCUCCCUGA--UACUCACAGUUGACUUUCAGCUGUAUGACCUUGCCAAUGCCCGUGCCGAUGCCAUUGUUCGCCUGGCACAAAUAGAA
.(((((((---.-(((.....))--)....(((((((.....))))))).............)))..((((((..((........)).))))))...)))). ( -23.70)
>DroAna_CAF1 6556 86 + 1
-----------UCGC---UGAGA--UACUCACAGUUCACUUUCAGCUGGAUGACCUUUCCGAUGCCGGUGCCGAUGCCAUUGUUGGCCUGGCACAGAUAGAA
-----------..((---(((((--.((.....))....)))))))((((.......)))).((((((.((((((......))))))))))))......... ( -28.60)
>DroPer_CAF1 14925 86 + 1
-------------CUCG-GCAGA--UACUCACAGUUCACUUUCAGUUGUAUGACCUUUCCGAUGCCAGUGCCGAUGCCAUUGUUGGCUUGGCACAGAUAGAA
-------------.(((-(((((--.((.....))))....(((......))).........)))).(((((((.((((....))))))))))).....)). ( -25.20)
>consensus
_____________CUCG_CCAGA__UACUCACAGUUCACUUUCAGCUGUAUGACCUUUCCGAUGCCGGUGCCGAUGCCAUUGUUGGCCUGGCACAGAUAGAA
...............................(((((.......)))))......((.((.(.((((((.((((((......))))))))))))).)).)).. (-18.36 = -18.58 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:27 2006