Locus 255

Sequence ID	3L_DroMel_CAF1
Location	700,876 – 700,969
Length	93
Max. P	0.960577

overview

Window 3

Location	700,876 – 700,969
Length	93
Sequences	4
Columns	117
Reading direction	reverse
Mean pairwise identity	74.31
Mean single sequence MFE	-33.22
Consensus MFE	-21.16
Energy contribution	-21.48
Covariance contribution	0.31
Combinations/Pair	1.04
Mean z-score	-1.99
Structure conservation index	0.64
SVM decision value	1.52
SVM RNA-class probability	0.960577
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 700876 93 - 23771897
AUUCGGAUUCAGAU------------------------UCGGAAUCGGAUUCGGAUUCGGAUUUGGAGUGGGGUCUCGAGUGGUUCGAGUGGCGAUCGGGAGUUCGAGAGGCGGCUG
((((((((((..((------------------------(((....)))))..))))))))))....(((.(..(((((((...(((((.......)))))..)))))))..).))). ( -31.70)
>DroSec_CAF1 56489 87 - 1
AUUCGGAUUCAGAU------------------------------UCGGAUUCGGAAUCGGAUUUGGAGUGGGGUCUUGAGUGGAUCGAGUGGCGAUCGGGAGUUCGAGAGGCGGCUG
.(((((((((.(((------------------------------((.......))))))))))))))((.(..((((((((.(((((.....))))).)...)))))))..).)).. ( -26.40)
>DroEre_CAF1 58583 117 - 1
AUUCGGAUUCAGAUUCGGACUCAGACUCGGAUUCGGAUUCGAAUUCGGAUUGGGAUUGGGAUUUGGAGUGGGGUCUCGAGUGGAUCGAGUGGCGAUCGGGAGUUCGAGAGGCGGCUG
.(((((((((..((((((((((..((((((((((.(((((.(((....))).))))).)))))).)))).))))).))))).(((((.....)))))..)))))))))......... ( -43.60)
>DroYak_CAF1 60584 89 - 1
----------------------------GGACUGCGAUUCGGAUUCGGAUUCAGAUUCGGAUUUGGAGUGGGGUCUCGAGUGGAUCGAGUGGCGAUCGGGAGUUCGAGAGGCGGCUG
----------------------------((.((((..(((((((((((((....)))))))))))))......((((((((.(((((.....))))).)...))))))).)))))). ( -31.20)
>consensus
AUUCGGAUUCAGAU________________________UCGGAUUCGGAUUCGGAUUCGGAUUUGGAGUGGGGUCUCGAGUGGAUCGAGUGGCGAUCGGGAGUUCGAGAGGCGGCUG
............................................((((((((......))))))))(((.(..((((((((.(((((.....))))).)...)))))))..).))). (-21.16 = -21.48 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:36 2006