Locus 2549

Sequence ID 3L_DroMel_CAF1
Location 7,135,682 – 7,135,777
Length 95
Max. P 0.785933
window3958

overview

Window 8

Location 7,135,682 – 7,135,777
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.56
Mean single sequence MFE -29.88
Consensus MFE -24.87
Energy contribution -24.07
Covariance contribution -0.80
Combinations/Pair 1.24
Mean z-score -1.10
Structure conservation index 0.83
SVM decision value 0.57
SVM RNA-class probability 0.785933
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7135682 95 - 23771897
CUCCCACUCCC-CGAAUGAAAACACGCAUCCAGGGCCGGCAUCCUGCGCACGCUGCAUCCGCUCCAGCUGCAGGCCGAGUGCAACCUCGGCGCCUU
........(((-.(.(((........))).).)))..(((...((((((.....))....((....)).))))((((((......))))))))).. ( -29.90)
>DroVir_CAF1 7505 74 - 1
----------------------AAACCAUGCAGAGCUGGCAUCCUGCGCACGCUGCAUCCGCUGCAGCUGCAGGCUGAGUGCAGCGCUGGUGCCUU
----------------------...............((((((..(((((.((((((.....)))))))))..((((....)))))).)))))).. ( -31.00)
>DroGri_CAF1 9410 83 - 1
-------------AUAUCAAACAAAUCAUGCAGAGCUGGCAUCCUGCGCACGCUGCAUCCGCUGCAGCUGCAGGCCGAGUGCACCGCUGGUGCCUU
-------------................((((..........))))(((.((((((.....)))))))))(((((.((((...)))).).)))). ( -27.40)
>DroEre_CAF1 2769 95 - 1
CUCCCACACCC-CGAAUGAAAACACGCAUCCAGGGCCGGCAUCCUGCGCACGCUGCAUCCGCUCCAGCUGCAGGCCGAGUGCAACGCCGGCGCCUU
...........-...................(((((((((....(((((.(((((((...((....)))))))..)).)))))..)))))).))). ( -31.00)
>DroYak_CAF1 89 96 - 1
CUCCCACACCCCCAAAUGAAAACACGCAUCCAGGGCCGGCAUCCUGCGCACGCUGCAUCCGCUCCAGCUGCAGGCCGAGUGCAACGCCGGCGCCUU
...............................(((((((((....(((((.(((((((...((....)))))))..)).)))))..)))))).))). ( -31.00)
>DroMoj_CAF1 8667 75 - 1
---------------------CAAACCAUGCAGAGCUGGCAUCCUGCGCACGCUGCACCCGCUCCAGCUGCAGGCCGAGUGCAGCGCCGGCGCCUU
---------------------.............((((((...((((((.(((((((...((....)))))))..)).)))))).))))))..... ( -29.00)
>consensus
______________AAUGAAAAAAAGCAUCCAGAGCCGGCAUCCUGCGCACGCUGCAUCCGCUCCAGCUGCAGGCCGAGUGCAACGCCGGCGCCUU
................................(.((((((....(((((.(((((((...((....)))))))..)).)))))..)))))).)... (-24.87 = -24.07 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:26 2006