Locus 2546

Sequence ID 3L_DroMel_CAF1
Location 7,132,347 – 7,132,464
Length 117
Max. P 0.868277
window3954

overview

Window 4

Location 7,132,347 – 7,132,464
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -38.72
Consensus MFE -30.46
Energy contribution -32.70
Covariance contribution 2.24
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.79
SVM decision value 0.86
SVM RNA-class probability 0.868277
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7132347 117 - 23771897
UACCUCCAUCGGAGCUGCGGUGCUUGGACUUGGUCUCCUUGAUGGAGAGUUGAGAUUCCUGCUGCUGCUGCUUCUGGAUCUGUUUCAUCACAUCGUUCAGCAUUUUCUGGGCCAUGU
....((((..(((((.(((((((..(((((..((((((.....))))).)..))..))).)).))))).)))))))))...........((((.((((((......)))))).)))) ( -41.30)
>DroSec_CAF1 47116 117 - 1
UACCUCCAUCGGAGCUGCGGUGCUUGGACUUGGUCUCCUUGAUGGAGAGCUGAGAUUCCUGUUGCUGCUGCUUCUGGAUCUGUUUCAUCACAUCGUUCAGCAUUUUCUGGGCCAUGU
....((((..(((((.((((((...(((((..((((((.....))))).)..))..)))...)))))).)))))))))...........((((.((((((......)))))).)))) ( -40.60)
>DroSim_CAF1 47508 117 - 1
UACCUCCAUCGGAGCUGCGGUGCUUGGACUUGGUCUCCUUGAUGGAGAGCUGAGAUUCCUGCUGCUGUUGCUUCUGGAUCUGUUUCAUCACAUCGUUCAGCAUUUUCUGGGCCAUGU
....((((..(((((.(((((((..(((((..((((((.....))))).)..))..))).)).))))).)))))))))...........((((.((((((......)))))).)))) ( -41.10)
>DroEre_CAF1 47415 105 - 1
UACCUCCAUCGGAACUUCGGUGCUUGGACUUGGUCUCCUUGGUGGAGAGCUGAGAUUCCGUU------------UGGAUCUGCUUCAUCACAUCGUUCAGCAUUUUCUGGGCCAUGU
....((((.((((((....)).......((..((((((.....))))).)..))..))))..------------))))...........((((.((((((......)))))).)))) ( -32.00)
>DroYak_CAF1 49237 117 - 1
UACCUCCAUCGGAGCUGUGGUGCUUGGACCUGCUCUCCUUGGUGGAGAGCUGAGAUUCCUGUUGCUGCUGCUGCUGGAUCUGCUUCAUCACAUCGUUCAGCAUUUUCUGGGCCAUGU
..........(((((...(((......))).(((((((.....)))))))..((((((..((.((....)).)).)))))))))))...((((.((((((......)))))).)))) ( -38.60)
>consensus
UACCUCCAUCGGAGCUGCGGUGCUUGGACUUGGUCUCCUUGAUGGAGAGCUGAGAUUCCUGUUGCUGCUGCUUCUGGAUCUGUUUCAUCACAUCGUUCAGCAUUUUCUGGGCCAUGU
....((((..(((((.(((((....(((((((((((((.....))))).)))))..)))....))))).)))))))))...........((((.((((((......)))))).)))) (-30.46 = -32.70 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:22 2006