| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,129,178 – 7,129,270 |
| Length | 92 |
| Max. P | 0.971239 |
| Location | 7,129,178 – 7,129,270 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 79.96 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -13.61 |
| Energy contribution | -12.68 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7129178 92 - 23771897 CCGCUUCAUUAUGCAGCGUUAACUUUGUAUGUAAAAGCGUAUAUACGUAUGUACAUAUGUACAUACAUAUAUGGAUGUGGCAAGCGGUGAAU (((((......(((.(((((......(((((((......)))))))((((((((....)))))))).......))))).))))))))..... ( -28.90) >DroSec_CAF1 44023 88 - 1 UCGCUUCAUAAUGCAGCGUUAACUUCGUAUGUAAAAGCGUAUAUACGUUUGUACAUAUGUAC----AUAUAUGCAUGUGGCAAGCGGUGAAU (((((((...(((((..........((((((((.((((((....)))))).))))))))...----.....)))))...).))))))..... ( -26.77) >DroEre_CAF1 44331 83 - 1 CCGUUUCAUUAAGCAGCGUUAACUUUGU-UGUAAGAGUAUAUAUAC----AUACGCGU----AUACGUGUAUGCAUGUGGCAAGCGGUGAAU ((((((......((((((.......)))-)))....((.(((((.(----(((((((.----...)))))))).)))))))))))))..... ( -24.20) >DroYak_CAF1 46157 80 - 1 CCGUUUCAUUAUGCAGCGUUAACUUUGUAUGUAAAAGCGUAUAUAU----GUAC--------AUAUGUAUAUGCAUGUGGCAAGCGGUGAAU (((((((..(((((((.(....).))))))).....((((((((((----(...--------.))))))))))).....).))))))..... ( -20.80) >consensus CCGCUUCAUUAUGCAGCGUUAACUUUGUAUGUAAAAGCGUAUAUAC____GUACAUAU____AUACAUAUAUGCAUGUGGCAAGCGGUGAAU (((((((....(((((((.......))).))))...((((((((......................)))))))).....).))))))..... (-13.61 = -12.68 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:19 2006