| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,128,508 – 7,128,602 |
| Length | 94 |
| Max. P | 0.878584 |
| Location | 7,128,508 – 7,128,602 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 86.24 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -18.14 |
| Energy contribution | -19.32 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.878584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7128508 94 + 23771897 AAGCUGAAAAGUGCUGAUAACUCCUAUCGCCAAUUGGUGUGUGGGAAAGCGAAAUGUGUCACACGAUUUGUUCGA-CGAGUGGAAAGUACAAGAA ..........(((((....((((((((((((....)))).)))))).((((((.((((...)))).))))))...-...))....)))))..... ( -23.80) >DroSec_CAF1 43350 83 + 1 AAACUGGAAAGUGCUGAUAACUCCUAUCGCCAAUUGGUGUGUGGGAAAGCGAAAUGUGUCACACGAUUUG------------GAAAGCACAAGAA ..........(((((......((((((((((....)))).))))))...((((.((((...)))).))))------------...)))))..... ( -22.70) >DroEre_CAF1 43649 94 + 1 GAACUGGAAAGCGCUGAUAACCACUAUCGCCAAUUGGUGUGUGGGAAAGCGAAAUGUGUCACACGUUUUGUUCGC-AGAGUGGAAAGUACAAGAA (.(((.....((.(((....((((...((((....)))).))))...(((((((((((...)))))))))))..)-)).))....))).)..... ( -26.70) >DroYak_CAF1 45459 95 + 1 AAAGUGGCAAGCGCUGAUAACUCCUAUCGCCAAUUGGUGUGUGGGAAAGCGAAAUGUGUCACACGAUUUGCUGGAAAGAGUGAAAAGUACAAGAA ...((((((..((((......((((((((((....)))).)))))).)))).....))))))((..((..((......))..))..))....... ( -28.20) >consensus AAACUGGAAAGCGCUGAUAACUCCUAUCGCCAAUUGGUGUGUGGGAAAGCGAAAUGUGUCACACGAUUUGUUCGA_AGAGUGGAAAGUACAAGAA ..........(((((......((((((((((....)))).)))))).((((((.((((...)))).)))))).............)))))..... (-18.14 = -19.32 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:18 2006