Locus 2541

Sequence ID 3L_DroMel_CAF1
Location 7,124,479 – 7,124,585
Length 106
Max. P 0.500000
window3947

overview

Window 7

Location 7,124,479 – 7,124,585
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 92.74
Mean single sequence MFE -29.21
Consensus MFE -20.90
Energy contribution -21.06
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7124479 106 + 23771897
CCCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUUGCCACAUCGCAGACAUCUUUCAUUCAUCUCGGAUUAGCAUCCAUUCGUUGACCAGAAGGA
.(((.....((((((..(((((((....)))))))....((....)).......))))))............(((.((.(((((........))))))))))))). ( -28.10)
>DroSec_CAF1 39296 106 + 1
CUCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUCGCCACAUCGCAGACAUCUUCCAUUCAUCUCGGAUUAGCAUCCAUUCAUUGACCAGAAGGA
....(((((((((((..(((((((....)))))))...........(......)))))))....(((.........)))...)))))..........((....)). ( -27.60)
>DroSim_CAF1 40014 106 + 1
CUCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUCGCCACAUCGCAGAUAUCUUCCAUUCAUCUCGGAUUAGCAUCCAUUCAUUGACCAGAAGGA
....(((((((((((..(((((((....)))))))...........(......)))))))....(((.........)))...)))))..........((....)). ( -25.30)
>DroEre_CAF1 39357 106 + 1
AUCUGAAGCGUCUGGUGGUGACUGUCAACGGUCACACACCAAUCUCGCCAUAUCGCAGACAUCUGCCAUUCAUCUCGAAUUAGCAUCCAUUCAAUGGACAGAAGGA
.((((..(((..((((((((((((....))))))).)))))..)(((....((.((((....)))).))......)))....)).(((((...))))))))).... ( -34.00)
>DroYak_CAF1 41069 106 + 1
CUCUGAUGCGUGUGGUGGUGACUGUCAGCGGUCACACACCAAUCUCGCCAUAUCGCAGACAUCUUCCAUUCAUCUCGCAUUAGCAUCCAUUCAUUGAACACAAGGA
..((((((((.(((((((((((((....))))))).))))).(((.((......)))))..............).))))))))..(((...............))) ( -31.06)
>consensus
CUCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUCGCCACAUCGCAGACAUCUUCCAUUCAUCUCGGAUUAGCAUCCAUUCAUUGACCAGAAGGA
....((((((((((.(((((((((....))))))).))....(((.((......)))))................)))))..)))))................... (-20.90 = -21.06 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:15 2006