Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 700,232 – 700,351 |
Length | 119 |
Max. P | 0.984076 |
Location | 700,232 – 700,324 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -33.33 |
Consensus MFE | -15.72 |
Energy contribution | -18.06 |
Covariance contribution | 2.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.74 |
Structure conservation index | 0.47 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 700232 92 + 23771897 UGGAUGGACUGCGGCG-U---GGAUG-------CCAUAUGUCAACG------CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUA ....((((((((((((-(---.(((.-------......))).)))------))))...(((((((((((....)))))))).))).......)))))).......... ( -37.80) >DroSec_CAF1 55837 81 + 1 UG-----------GCG-U---GGAUG-------CCAUAUGUCAACG------CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUA .(-----------(((-(---.(((.-------......))).)))------)).....(((((((((((....)))))))).)))(((......)))........... ( -25.40) >DroSim_CAF1 56123 92 + 1 UGGAUGGACUGCGGCG-U---GGAUG-------CCAUAUGUCAACG------CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUA ....((((((((((((-(---.(((.-------......))).)))------))))...(((((((((((....)))))))).))).......)))))).......... ( -37.80) >DroEre_CAF1 57914 92 + 1 UGGAUGGACUGCGGAG-U---AGAUG-------CCAUAUGUCAACG------CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUA ....((((((((((.(-(---.(((.-------......))).)).------))))...(((((((((((....)))))))).))).......)))))).......... ( -32.10) >DroWil_CAF1 41338 103 + 1 UGGCCAGUGUGUUGCU-AUGCCAAUGCAUACAUACAUAUGUCAACGG-----GGGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGAGAAAUCAGUCCAAUUAAAAAUA ((((..((((((((.(-((((....))))))).))))))))))....-----((((....((((((((((....)))))))).))((....)).))))........... ( -33.00) >DroAna_CAF1 57655 100 + 1 --ACUGGACUACGGCGGC---GGAUC----GCCGCAUAUGUCAACGUUGGUGCUGCGCACGCGCAGAUACAAAUGUAUCUAUAGCGGGAAAUCAGUCCAAUUAAAAAUA --..((((((...(((((---(...)----))))).........(((((((((.......))))((((((....)))))).))))).......)))))).......... ( -33.90) >consensus UGGAUGGACUGCGGCG_U___GGAUG_______CCAUAUGUCAACG______CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUA ....(((((((...........(((..............))).................(((((((((((....)))))))).)))......))))))).......... (-15.72 = -18.06 + 2.33)
Location | 700,232 – 700,324 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -27.73 |
Consensus MFE | -16.07 |
Energy contribution | -17.10 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.20 |
Mean z-score | -2.53 |
Structure conservation index | 0.58 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 700232 92 - 23771897 UAUUUUUAAUUGGACUGAUUUCCCGCUACAGAUACAUUUGUAUCUGCGCGUGCGCAG------CGUUGACAUAUGG-------CAUCC---A-CGCCGCAGUCCAUCCA ..........(((((((......((((..((((((....))))))(((....)))))------)).........((-------(....---.-.))).))))))).... ( -30.50) >DroSec_CAF1 55837 81 - 1 UAUUUUUAAUUGGACUGAUUUCCCGCUACAGAUACAUUUGUAUCUGCGCGUGCGCAG------CGUUGACAUAUGG-------CAUCC---A-CGC-----------CA ...........(((......)))((((..((((((....))))))(((....)))))------))........(((-------(....---.-.))-----------)) ( -20.80) >DroSim_CAF1 56123 92 - 1 UAUUUUUAAUUGGACUGAUUUCCCGCUACAGAUACAUUUGUAUCUGCGCGUGCGCAG------CGUUGACAUAUGG-------CAUCC---A-CGCCGCAGUCCAUCCA ..........(((((((......((((..((((((....))))))(((....)))))------)).........((-------(....---.-.))).))))))).... ( -30.50) >DroEre_CAF1 57914 92 - 1 UAUUUUUAAUUGGACUGAUUUCCCGCUACAGAUACAUUUGUAUCUGCGCGUGCGCAG------CGUUGACAUAUGG-------CAUCU---A-CUCCGCAGUCCAUCCA ..........(((((((......((((..((((((....))))))(((....)))))------)).........((-------.....---.-..)).))))))).... ( -25.90) >DroWil_CAF1 41338 103 - 1 UAUUUUUAAUUGGACUGAUUUCUCGCUACAGAUACAUUUGUAUCUGCGCGUGCGCCC-----CCGUUGACAUAUGUAUGUAUGCAUUGGCAU-AGCAACACACUGGCCA ..........(((.((.......(((..(((((((....))))))).)))(((....-----(((.((.(((((....))))))).)))...-.))).......))))) ( -24.50) >DroAna_CAF1 57655 100 - 1 UAUUUUUAAUUGGACUGAUUUCCCGCUAUAGAUACAUUUGUAUCUGCGCGUGCGCAGCACCAACGUUGACAUAUGCGGC----GAUCC---GCCGCCGUAGUCCAGU-- ........(((((((((.......(((..((((((....))))))(((....))))))................(((((----(...)---)))))..)))))))))-- ( -34.20) >consensus UAUUUUUAAUUGGACUGAUUUCCCGCUACAGAUACAUUUGUAUCUGCGCGUGCGCAG______CGUUGACAUAUGG_______CAUCC___A_CGCCGCAGUCCAUCCA ..........(((((((......(((..(((((((....))))))).))).............(((......))).......................))))))).... (-16.07 = -17.10 + 1.03)
Location | 700,261 – 700,351 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.29 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -17.55 |
Energy contribution | -17.88 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.64 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 700261 90 + 23771897 UCAACG-----------------CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUAAUAAAGGUGCAACG-----GCGGACCGUUCGG-------- ....((-----------------(((.((((((((((((((....)))))))).)).(((......))).................))))..))-----)))..((....))-------- ( -29.00) >DroPse_CAF1 63879 120 + 1 UCAACGAGGAGAGCUACGGUGCGGCGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUAAUAAAGGUGGAACUACUAUGCGGAACGUUCCACAACACAC ............(((((.(((((.......)))))((((((....))))))))))).(((......))).................(((((((.............)))))))....... ( -33.42) >DroWil_CAF1 41377 80 + 1 UCAACGG----------------GGGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGAGAAAUCAGUCCAAUUAAAAAUAAUAAAGGUGGAAC-------------GUU----------- ..((((.----------------((((....((((((((((....)))))))).))((....)).)))).((((....))))..........)-------------)))----------- ( -22.10) >DroYak_CAF1 59935 90 + 1 UCAACG-----------------CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUAAUAAAGGUGCAACU-----GCGGACCGUUCGG-------- ....((-----------------((((((.(((((((((((....)))))))).)))(((......))).................)))))...-----)))..((....))-------- ( -28.00) >DroAna_CAF1 57686 84 + 1 UCAACGU---------UGGUG--CUGCGCACGCGCAGAUACAAAUGUAUCUAUAGCGGGAAAUCAGUCCAAUUAAAAAUAAUAAAGGUGGAACU-----G-------------------- .....((---------(((.(--(((..(.(((..((((((....))))))...))).)....)))))))))......................-----.-------------------- ( -18.90) >DroPer_CAF1 68974 120 + 1 UCAACGAGGAGAGCUACGGUGCGGCGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUAAUAAAGGUGGAACUACUAUGCGGAACGUUCCACAACACAC ............(((((.(((((.......)))))((((((....))))))))))).(((......))).................(((((((.............)))))))....... ( -33.42) >consensus UCAACG_________________CUGCGCACGCGCAGAUACAAAUGUAUCUGUAGCGGGAAAUCAGUCCAAUUAAAAAUAAUAAAGGUGGAACU_____GCGGA_CGUUC__________ ..........................(((.(((((((((((....)))))))).)))(((......))).................)))............................... (-17.55 = -17.88 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:35 2006