| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,120,220 – 7,120,340 |
| Length | 120 |
| Max. P | 0.545998 |
| Location | 7,120,220 – 7,120,340 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.44 |
| Mean single sequence MFE | -48.77 |
| Consensus MFE | -28.85 |
| Energy contribution | -29.80 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7120220 120 + 23771897 UCGCACUGAGCUGCCUUCUCGUGCUGCAGGAAGUCCUGCAGUUCACUUGAUUCCUGUUCGAUGGCGGCCUUCUCUUGGAGCAGCAACUGUUGCGUGGCCAAGGAUCUUCGCAUCUCCAAC ..((.....((((((.((..(.((((((((....)))))))).)....((.......)))).))))))..((.(((((.(((((....)))))....))))))).....))......... ( -44.20) >DroVir_CAF1 67527 120 + 1 UCGCACUGGGCGGCCUUUUCGUGUUGGAGAAAAUCCUGCAGCUCGCUUGACUCCUGCUCAAUGGCGGCCUUCUCCUGCAACAGCAGCUGCUGCGUGGCCAGCGAGCGACGCAUUUCCUGC ..(((..((((.(((....((.((((.((......)).)))).)).(((((....).)))).))).)))).....)))....((((..(.(((((.((......)).))))).)..)))) ( -39.80) >DroGri_CAF1 66969 120 + 1 UCGCACUGAGCGGCCUUCUCGUGCUGCAGGAAAUCCUGCAGCUCGCUGGACUCCAGCUCAAUGGCCGCUUUCUCCUGCAGCAGCAGCUGCUGCGUGCUCAGCGAGCGACGCAUCUCCAGC ..((((.((((((((.....(.((((((((....)))))))).)(((((...))))).....))))))))......(((((((...)))))))))))...(((.....)))......... ( -60.10) >DroWil_CAF1 41379 120 + 1 UCACAUUGGGCAGCCUUCUCAUGCUGUAGGAAAUCUUGCAAUUCACUCGAUUCCAAUUCAAUGGCAGCCUUCUCCUGCAACAGGAGCUGCUGUGUGGCCAAGGAGCGACGCAUUUCCAUU ...(((((((((((........))))).((((.((..(.......)..))))))...))))))(((((....(((((...))))))))))(((((.((......)).)))))........ ( -34.90) >DroMoj_CAF1 62759 120 + 1 UCGCACUGGGCGGCCUUUUCGUGCUGCAGGAAAUCCUGCAGCUCGCUGGACUCCUGCUCGAUGGCGGCCUUCUCCUGCAGCAGCAGCUGCUGCGUGGCCAGCGAGCGAUGCAUCUCCUGU ..(((..(((.(.((....((.((((((((....)))))))).))..)).).)))(((((.((((.((........(((((((...))))))))).)))).)))))..)))......... ( -55.30) >DroAna_CAF1 39364 120 + 1 UCCACCUGGGCCGCCUUCUCGUUCUGCAGGAAGUCCUGCAGCUCGCUGGACUCCUGCUCGAUGGCCGCCUUCUCUUGGAGCAGCAGCUGCUGGGUGGCCAGGGAACGGCGCAUCUCCAGC .....(((((.(((((((((.....((((((.((((.((.....)).))))))))))....(((((((((((....))).((((....))))))))))))))))).))))....))))). ( -58.30) >consensus UCGCACUGGGCGGCCUUCUCGUGCUGCAGGAAAUCCUGCAGCUCGCUGGACUCCUGCUCAAUGGCGGCCUUCUCCUGCAGCAGCAGCUGCUGCGUGGCCAGCGAGCGACGCAUCUCCAGC .......(((..((......(.((((((((....)))))))).)...........((((..((((.((........(((((((...))))))))).))))..))))...))..))).... (-28.85 = -29.80 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:12 2006