Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,113,724 – 7,113,844 |
Length | 120 |
Max. P | 0.547599 |
Location | 7,113,724 – 7,113,844 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.89 |
Mean single sequence MFE | -44.17 |
Consensus MFE | -20.50 |
Energy contribution | -21.03 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.25 |
Mean z-score | -1.86 |
Structure conservation index | 0.46 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7113724 120 - 23771897 CACUCGGAGUAGACCAUAGUUUCCGGACAGAAUGGACUCCAUCACGGACUCCGUAUGAGGGCUCAGCAAGCCGGCGUGAUCGAUGGCCGCCAGUGAGAGGUAACUGGCCAAGUUUCGCGA ..((((((((...((((.(((....)))...)))))))))...((((...))))..)))((((.....))))..(((((....((((((((.......)))....)))))....))))). ( -37.50) >DroVir_CAF1 59791 120 - 1 CACGCGCAGCAGGCCAUAGUUGCCGGAGAGUAUGGAAUCCAUGAUGGGAUCCAUGAAGUCUAUCAGCAAAUAGGCAUAGUCGAUGGCGGCCAGGGACAAGUAGCUGGCUAGAUUUCGUGA (((((.((((..(((...(((((((..((.((((((.(((.....))).))))))..((((((......))))))....))..)))))))...)).).....))))))..(....)))). ( -38.50) >DroGri_CAF1 59411 120 - 1 AACACGCAGUAGGCCAUAGUUGCCGGAGAGUAUGGAUUCCAUGAUGGGUUCCAUGAUAUCUAUCAACAGGUAGGCAUAAUCAAUGGCCGCCAGGGAGAGAUAGCUGGCCAGAUUGCGCGA ..(.((((((.((((((.(.(((((((...((((((..((.....))..))))))...)))(((....))).))))....).))))))(((((..........)))))...)))))).). ( -44.60) >DroWil_CAF1 33867 120 - 1 CACACGCAACAGACCGUAGUUCCCAGUGAGUAUGGACUCCAUAAUCGAGUCCACAUGUGGACUCAACAAAUAGGCAUAGUCGAUGGCUGCCAGCGACAAAUAGCUGGCCAAAUUACGUGA ..(((((....(((..(.(((......((.(((((...))))).))(((((((....)))))))........))))..)))....)).((((((........))))))........))). ( -38.40) >DroMoj_CAF1 55553 120 - 1 CACGCGCAGCAGGCCGUAGUUACCCGCUAGAAUGGAGUCCAUGAUGGGCUCCAUGAUGUCUAUCAGCAAGUAGGCGUAGUCAAUGGCAGCCAGGGACAGAUAGCUGGCCAGGUUGCGGGA ..(.((((((.((((((....))..((((..(((((((((.....))))))))).((((((((......)))))))).(((..(((...)))..)))...)))).))))..)))))).). ( -50.30) >DroAna_CAF1 33069 120 - 1 CACCCGCAGCAGACCGUAGUUGCCAGAGAGGAUGGAGUCCAUCACUGCUUCCGUGUGGGGGCUCAGGAGGCAGGCGUGGUCGAUGGCAGCCAGGGAGAGGUAGCUGGCCAGGUUGCGGGA ..((((((((...((.(.(((((((..((.(((((...))))).((((((((..((....))...))))))))......))..))))))).).))...(((.....)))..)))))))). ( -55.70) >consensus CACACGCAGCAGACCAUAGUUGCCGGAGAGUAUGGACUCCAUGAUGGGCUCCAUGAGGGCUAUCAGCAAGUAGGCAUAGUCGAUGGCAGCCAGGGACAGAUAGCUGGCCAGAUUGCGCGA ..(.((((((.(.((((..............(((((.(((.....))).)))))..................(((...))).))))).(((((..........)))))...)))))).). (-20.50 = -21.03 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:06 2006