Locus 2534

Sequence ID 3L_DroMel_CAF1
Location 7,110,968 – 7,111,081
Length 113
Max. P 0.613546
window3937

overview

Window 7

Location 7,110,968 – 7,111,081
Length 113
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 96.04
Mean single sequence MFE -31.00
Consensus MFE -26.60
Energy contribution -26.16
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -1.35
Structure conservation index 0.86
SVM decision value 0.16
SVM RNA-class probability 0.613546
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7110968 113 - 23771897
AGUGAAAAAGAUAUGCACGCAAUUUGUAGAUCUU-GAACGUGACAAGAUCACAGUUCGACUUACAGAAGUCUGUCUGUGCUUUUCGAAGAGCGUGCGAAUGACUCAAUUCCCAG
..............((((((...((((.((((((-(.......)))))))))))(((((..((((((......))))))....)))))..))))))((((......)))).... ( -32.60)
>DroSec_CAF1 26059 114 - 1
AGUGAAAAAGAUAUGCACGAAAUUUGUAGAUCUUCGAACGUGACAAGAUCGCAGUUCGACUUACAGAAGUUUGUCUGCGCUUUUCGAAGAGCGUGCGAAUGACUCAAUUCCCAG
.((((...((((.((((.......)))).))))((((((((((.....)))).)))))).)))).((.((((((..(((((((....)))))))))))))...))......... ( -27.80)
>DroSim_CAF1 26746 114 - 1
AGUGAAAAAGAUAUGCACGCAAUUUGUAGAUCUUCGAACGUGACAAGAUCGCAGUUCGACUUACAGAAGUCUGUCUGUGCUUUUCGAAGAGCGUGCGAAUGACUCAAUUCCCAG
..............((((((..((((.((....((((((((((.....)))).))))))..((((((......))))))))...))))..))))))((((......)))).... ( -31.10)
>DroEre_CAF1 25956 112 - 1
AGUGAA-AAGAUAUGCACGCAAUUCGUAGAUCUU-GAACGUGACAAGAUCGCAGUUCGACUUACAGAAGUCUGUCUGUGCUGGUGGAAGAGCGUGCGAAUGACUCAAUUCCCAG
......-.......((((((..(((...((((((-(.......)))))))((((...(((((....)))))...)))).......)))..))))))((((......)))).... ( -32.90)
>DroYak_CAF1 27509 113 - 1
AGUGAAAAAGAUAUGCACGCAAUUUGUAGAUCUU-GAACGUGACAAGAUCGCAGUUCGACUUACAGAAGUCUGUCUGUGCUUUUAGAAGAGCGUGCGAAUGACUCAAUUCCCAG
..............((((((..(((...((((((-(.......)))))))((((...(((((....)))))...)))).......)))..))))))((((......)))).... ( -30.60)
>consensus
AGUGAAAAAGAUAUGCACGCAAUUUGUAGAUCUU_GAACGUGACAAGAUCGCAGUUCGACUUACAGAAGUCUGUCUGUGCUUUUCGAAGAGCGUGCGAAUGACUCAAUUCCCAG
..............((((((..(((...((((((..........))))))((((...(((((....)))))...)))).......)))..))))))((((......)))).... (-26.60 = -26.16 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:05 2006