Locus 2533

Sequence ID 3L_DroMel_CAF1
Location 7,108,112 – 7,108,208
Length 96
Max. P 0.768643
window3936

overview

Window 6

Location 7,108,112 – 7,108,208
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -17.93
Consensus MFE -11.99
Energy contribution -12.77
Covariance contribution 0.78
Combinations/Pair 1.05
Mean z-score -3.21
Structure conservation index 0.67
SVM decision value 0.52
SVM RNA-class probability 0.768643
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7108112 96 - 23771897
AAAUCAUUUAAUCCACUUCCGGUUGCAAAACAGGAAUCACACAUAUGAAGUGAUUAAAAAUCAUAGAAGGUUUGACACCUUCAAAUAAUAAGAAAA
...((.(((((((.((((((.(((....))).))).(((......))))))))))))).......((((((.....)))))).........))... ( -18.10)
>DroSec_CAF1 23203 94 - 1
AAAUAAGCCAAGCCACUUCCGGUUGCAAAACAGCAAUCACACAUAUAAAGUGAUUGAAAAUCAUAGAAGGUUUGACACCGUAAAA-AA-AAGAAAA
......(.((((((......((((((......))))))...........(((((.....)))))....)))))).).........-..-....... ( -17.80)
>DroSim_CAF1 23831 95 - 1
AAAUAAGUCAAUCAACUUCCGGUUGCAAUACAGCAAUCACACAUAUAAAGUGAUUGAGAAUCAUAGAAGAUUUGACACCAUAAAA-AAUAAGAAAA
......(((((....((((.((((((......))))))...........(((((.....))))).))))..))))).........-.......... ( -17.90)
>consensus
AAAUAAGUCAAUCCACUUCCGGUUGCAAAACAGCAAUCACACAUAUAAAGUGAUUGAAAAUCAUAGAAGGUUUGACACCAUAAAA_AAUAAGAAAA
......(((((....((((.((((((......))))))...........(((((.....))))).))))..))))).................... (-11.99 = -12.77 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:04 2006