Locus 2532

Sequence ID 3L_DroMel_CAF1
Location 7,104,641 – 7,104,737
Length 96
Max. P 0.620549
window3935

overview

Window 5

Location 7,104,641 – 7,104,737
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 91.21
Mean single sequence MFE -26.87
Consensus MFE -21.31
Energy contribution -21.62
Covariance contribution 0.31
Combinations/Pair 1.16
Mean z-score -2.44
Structure conservation index 0.79
SVM decision value 0.18
SVM RNA-class probability 0.620549
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7104641 96 - 23771897
AUUUUGCUGGUAAUCAGCAGAUAUCGAUAUCUUUAUUUCGCUAAUUUCGCUGCCCAACUACAAGCG-GGCGACAUUGUCAAAGGUAGCGAUAUUGGA
..(((((((.....)))))))...................(((((.((((((((.....((((...-(....).))))....)))))))).))))). ( -28.20)
>DroSec_CAF1 19769 96 - 1
AUUUUGCUGGUAAUCAGCAGAUAUCGAUAUCUUUAUUUCACUAAUUUCGUUGCCCAACUACAAGCG-GGCGACAUUGUCAAAGGUAGCGAUAUUGGA
....(((((.....)))))(((((((.((((((((((.....)))...(((((((..........)-))))))......))))))).)))))))... ( -27.70)
>DroSim_CAF1 20373 96 - 1
AUUUUGCUGGUAAUCAGCAGAUAUCGAUAUCUUUAUUUCACUAAUUUCGCUGCCCAACUACAAGCG-GGCGACAUUGUCAAAGGUAGCGAUAUUGGA
..(((((((.....)))))))...................(((((.((((((((.....((((...-(....).))))....)))))))).))))). ( -28.50)
>DroEre_CAF1 19871 96 - 1
AUUUUGCUGGUAAUCAGCAGAUAUCGAUAUCUUUAUUUCACUAAUUUCGCUGCCCAGCUACAAUCG-AGCGACAUUGUCAAAGGUAGCGAUAUUGAA
..(((((((.....)))))))..((((((((.(((......)))....((((((..(((.......-)))(((...)))...)))))))))))))). ( -27.10)
>DroYak_CAF1 21345 96 - 1
AUUUUGCUGGUAAUCAGCAGAUAUCGAUAUCUUUAUUUCGCUAAUUUCGCUGCCCAACUACAAGCG-AGCGACUUUGUCAAAGGUAGCGAUAUUGGA
....(((((.....)))))(((((((.(((((((((.((((.....(((((...........))))-)))))....)).))))))).)))))))... ( -26.60)
>DroAna_CAF1 25110 96 - 1
AUUUUGCUGAUUAGUUGCCGAUAUGAAUAUCUUUAUUUCGCCAAUUU-ACUGCCCAACUACAAGAAGGGGUACAUUGUCAAAGGUAGCGAUAUCGGA
......(((((..((((((((.(((((....))))).))(.((((.(-((..(((..(.....)..)))))).)))).)...))))))...))))). ( -23.10)
>consensus
AUUUUGCUGGUAAUCAGCAGAUAUCGAUAUCUUUAUUUCACUAAUUUCGCUGCCCAACUACAAGCG_GGCGACAUUGUCAAAGGUAGCGAUAUUGGA
..(((((((.....)))))))...................(((((.((((((((.....((((.(.....)...))))....)))))))).))))). (-21.31 = -21.62 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:03 2006