| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,101,341 – 7,101,437 |
| Length | 96 |
| Max. P | 0.643422 |
| Location | 7,101,341 – 7,101,437 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.98 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -20.83 |
| Energy contribution | -20.88 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7101341 96 + 23771897 -----UUAUUCUUUC----------AUUUCCUAUUCCAGCAACCUACGGAAGUUUCCAAGUGGAGCUGUGGCGUCUUCGCCACACAGCAGCCCGAGCAACCAUCGAUGCCA -----..........----------.............(((......(((....)))..((((.(((((((((....))))..))))).((....))..))))...))).. ( -22.70) >DroSec_CAF1 16156 106 + 1 -----UGAAUUUGUCAUGUGUAUCCAUUCCCUAAUCCAGCAACCUACGGAAGUUUCCAAAUGGAGCUGUGGCGUCUUCGCCACACGGCAGCCCGAGCAACCAUCGAUGCCA -----...........((.(((((..........((((.......((....)).......))))(((((((((....)))))).(((....)))))).......))))))) ( -29.44) >DroSim_CAF1 16578 95 + 1 -----UGAAUUUGUCAUGUGU-----------AAUCUAGCAACCUACGGAAGUUUCCAAGUGGAGCUGUGGCGUCUUCGCCACACGGCAGCCCGGGCAACCAUCGAUGCCA -----............((((-----------....((((.....((....)).(((....))))))).((((....))))))))((((....((....)).....)))). ( -29.70) >DroEre_CAF1 16498 89 + 1 -----UUA-----------------AUUCCCCAAUCCAGCAACCUACGGUAGUUUCCAAGUGGAGCUGUGGCGCCUUCGCCACACGGCAGCCCGGGCAACCAUCGAUGCCA -----...-----------------............(((.(((...)))....(((....))))))((((((....))))))..((((....((....)).....)))). ( -26.90) >DroYak_CAF1 18160 89 + 1 -----UUA-----------------AUUUCCCAAUCCAGCAACCUACGGCAGUUUCCAAGUGGAGCUGUGGCGCCUUCGCCACACGGCAGCCCGGGCAACCAUCGAUGCCA -----...-----------------.............(((......(((....(((....)))(((((((((....))))))..))).))).((....)).....))).. ( -27.00) >DroAna_CAF1 17424 97 + 1 GACCACUAAUCUUUA----------AUUU----UUGCAGCCACUUAUGGCAGUUUUCAGGUGGAGCUCUGGCGGGUCCGCCACACCGCUGCCCGGGCCACCAUCGACGCCA ...............----------....----..((.((((....)))).(((....(((((.....(((((....)))))..(((.....))).)))))...))))).. ( -27.60) >consensus _____UUAAU_U_UC__________AUUUCC_AAUCCAGCAACCUACGGAAGUUUCCAAGUGGAGCUGUGGCGUCUUCGCCACACGGCAGCCCGGGCAACCAUCGAUGCCA ......................................(((......((......))..((((.(((((((((....)))))))..)).((....))..))))...))).. (-20.83 = -20.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:02 2006