Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,097,530 – 7,097,622 |
Length | 92 |
Max. P | 0.508566 |
Location | 7,097,530 – 7,097,622 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.60 |
Mean single sequence MFE | -27.85 |
Consensus MFE | -17.36 |
Energy contribution | -16.45 |
Covariance contribution | -0.91 |
Combinations/Pair | 1.20 |
Mean z-score | -1.39 |
Structure conservation index | 0.62 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7097530 92 - 23771897 -CGAAGCUAA------UCUGUUGGUUUUUCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAGGGAAAACUUUGUUAACUCCACUGCCCUGCCCCAG -.........------.(((.(((((((((((....)))))))))))((((((((((...(((((((....)))))))....))))).)))))...))) ( -32.90) >DroPse_CAF1 59923 97 - 1 CCCUAACUAAAAUGCGUGUGUUG--UUUUCAGUUACUUGGAGAACCACAAGGAGUGGUUCGAUAAGGAGAACUACGUGCAUCAUCCCACCGUACACCAG ...............(..(((.(--(((((.....((((..(((((((.....)))))))..)))))))))).)))..).................... ( -24.60) >DroSim_CAF1 12617 92 - 1 -CUAAGCUAA------UCUGUUGGUUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAGGGAGAACUAUGUUAACUCCACUGCCCUGCCCCAG -.........------.(((.(((((((.(((....))).)))))))((((((((((...((((.((....)).))))....))))).)))))...))) ( -28.30) >DroEre_CAF1 12648 92 - 1 -UCGAGCUAA------UCUCUUGGCUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAAGGAUAACUAUGUGAACUCCACUGCCCUGCCUCAG -..(((....------((((((((((....)))))...)))))....(((((((((((((.(((((.....)).))))))..))))).))))).))).. ( -29.70) >DroYak_CAF1 12998 92 - 1 -CCAAGCUAA------UCUGUUGCUUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGAUAAGGAUAACUAUGUGAACUCCACUGCGCUGCCCCAG -..((((...------......))))..(((((..((((..(((((((.....)))))))..)))).........(((.....)))...)))))..... ( -27.00) >DroPer_CAF1 61515 97 - 1 CCCAAACUAAAAUGCGUGUGUUG--UUUUCAGUUACUUGGAGAACCACAAGGAGUGGUUCGAUAAGGAGAACUACGUGCAUCAUCCCACCGUACACCAG ...............(..(((.(--(((((.....((((..(((((((.....)))))))..)))))))))).)))..).................... ( -24.60) >consensus _CCAAGCUAA______UCUGUUGGUUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAAGGAGAACUAUGUGAACUCCACUGCCCUGCCCCAG ....((((......................)))).((((..(((((((.....)))))))..))))................................. (-17.36 = -16.45 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:01 2006