Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 699,561 – 699,653 |
Length | 92 |
Max. P | 0.965758 |
Location | 699,561 – 699,653 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.84 |
Mean single sequence MFE | -33.91 |
Consensus MFE | -25.09 |
Energy contribution | -26.09 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.91 |
Structure conservation index | 0.74 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 699561 92 - 23771897 ------ACUAGCGUCCUUGGGGUAGAAGAAGACAGAGAGCUGCCGUCAGGGACAACCUGCCGUGGCAA-AGCGGCAACCUCAAUUAGGGGUUGUCAUCU ------....(((((((((((((((..............))))).))))))))....(((....))).-.))(((((((((.....))))))))).... ( -37.64) >DroSec_CAF1 55191 85 - 1 ------ACUAGCGUCCUUGGGGUAAAGGAAGACAGAGAGCUGCCGCCAGGGAC-------UGUGGCAA-AGCGGCAACCUCAAUUAGGGGUUGUCAUCU ------.(((..((((((((((((................)))).))))))))-------..)))...-...(((((((((.....))))))))).... ( -31.79) >DroSim_CAF1 55477 85 - 1 ------ACUAGCGUCCUUGGGGUAGAAGAAGACAUGAAGCUGCCGUCAGGGAC-------UGUGGCAA-AGCGGCAACCUCAAUUAGGGGUUGUCAUCU ------.(((..(((((((((((((....(....)....))))).))))))))-------..)))...-...(((((((((.....))))))))).... ( -32.10) >DroEre_CAF1 57278 86 - 1 ------GCUAGCGUCCUUGGGGUAGAAGAAGAUGGAGAGCUGCCGACAGGGAC-------UGUGGCAAAAGCGGCAACCUCAAUUAGGGGUUGUCAUCU ------((((..(((((((.(((((..............)))))..)))))))-------..))))......(((((((((.....))))))))).... ( -35.44) >DroYak_CAF1 59249 86 - 1 ------GCUAGCGUCCUUGGGGUAGAAGAAGAUGGAGAGCCGUCGACAGGGAC-------UGUGGCAAGAGCGGCGACCUCAAUUAGGGGUUGUCAUCU ------((((..(((((((...........(((((....)))))..)))))))-------..)))).(((..(((((((((.....))))))))).))) ( -34.12) >DroAna_CAF1 56933 80 - 1 UGUCUGAACGGUGUCCUUGGCUUAAACAGAG----------GCAGCCAGGGGC-------CGUGGCA--AGCAGCAACCUCAAUUAGGGGUUGUCAUCC ((..((.(((((..((((((((.........----------..))))))))))-------)))..))--..))((((((((.....))))))))..... ( -32.40) >consensus ______ACUAGCGUCCUUGGGGUAGAAGAAGACAGAGAGCUGCCGACAGGGAC_______UGUGGCAA_AGCGGCAACCUCAAUUAGGGGUUGUCAUCU ............(((((((((((((..............))))).))))))))...........((....))(((((((((.....))))))))).... (-25.09 = -26.09 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:33 2006