Locus 2529

Sequence ID 3L_DroMel_CAF1
Location 7,092,228 – 7,092,348
Length 120
Max. P 0.573551
window3932

overview

Window 2

Location 7,092,228 – 7,092,348
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.78
Mean single sequence MFE -44.87
Consensus MFE -24.84
Energy contribution -25.93
Covariance contribution 1.09
Combinations/Pair 1.39
Mean z-score -1.74
Structure conservation index 0.55
SVM decision value 0.08
SVM RNA-class probability 0.573551
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7092228 120 - 23771897
UCCUCGUGACUUUCGAGGAGCGUGGCGCGGUGGACCAGACGCUCUGUGGUGUCCCAGAUGAUGUCGCUGAGCGGCUCCUUGGGAUCGAUGCGCAGCAGGUGCUGCAGUAUGUUGAGGAAU
(((((((((.(..((((((((.((((......).)))..(((((.((((..((......))..)))).)))))))))))))..))))(((((((((....))))).))))..)))))).. ( -55.50)
>DroVir_CAF1 36895 120 - 1
UCAUCCGGAGACUCGAGCAGUGUGGCGCGAUGCACCAACCGCUCGGUGGUGUCCCAAAUAACGUCGCUCAGCGGAUCCUUCGAAUCGAUGCGCAGCAGAUGCUGCAAUAUGCUAAGAAAG
.(((((((((..((..((.(.((((((..((((((((.((....)))))))).....))..)))))).).)).))..)))))....)))).(((((....)))))............... ( -37.60)
>DroGri_CAF1 34789 120 - 1
CCCUCGGGAGCUUCGAGCAACGAUGCGCGAUGCACCAGCCGCUCGGCGGUGUCCCAGAUGACAUCGCUUAACGGAUCCUUCGAAUCGAUGCGCAGCAGAUGUUGCAAUAUGCUGAGGAAG
.((((((.(((.(((((((.((.....)).))).....(((...(((((((((......)))))))))...)))..........)))).))(((((....)))))....).))))))... ( -45.50)
>DroWil_CAF1 8986 120 - 1
UCCUCAUGACUUUCCAGCAAUGUGGCUCGAUGGACCAAACGUUCAGUAGUAUCCCAAAUAAUAUCGCUUAACGGUUCCUUCGAGUCAAUGCGUAGCAAAUGCUGUAAUAUAUUUAGGAAA
...........((((.(((...((((((((.(((.....((((.((..((((........))))..)).))))..))).)))))))).))).((((....))))...........)))). ( -34.30)
>DroMoj_CAF1 34021 120 - 1
UUAUCGGGAUCCUCGAGUAGUGUGGCGCGAUGCACCAGCCGCUCAGUCGUAUCCCAAAUGACAUCGCUCAGCGGAUCCUUCGAAUCGAUGCGCAGCAGAUGUUGCAAUAUAUUGAGAAAU
...(((((((((.(((((.(.(((((...........))))).).(((((.......)))))...)))).).))))))..))).((((((.(((((....)))))....))))))..... ( -37.50)
>DroPer_CAF1 55644 120 - 1
UCCUCGUGGCUCUCGAGCAGCGUGGCCCGGUGCACCAGGCGCUCGGUGGUGUCCCAGAUGAUGUCGCUGAGCUGCUCCUUGGAGUCGAUGCGCAGCAGGUGCUGCAGGAUACUGAGGAAU
(((((.((((((.((((.(((...(((.((....)).)))(((((((((..((......))..))))))))).))).))))))))))....(((((....)))))........))))).. ( -58.80)
>consensus
UCCUCGGGACUCUCGAGCAGCGUGGCGCGAUGCACCAGCCGCUCGGUGGUGUCCCAAAUGACAUCGCUCAGCGGAUCCUUCGAAUCGAUGCGCAGCAGAUGCUGCAAUAUACUGAGGAAU
((((((......(((((((.((.....)).)))......((((.(((((((((......))))))))).))))...........))))...(((((....))))).......)))))).. (-24.84 = -25.93 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:00 2006