Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,084,409 – 7,084,502 |
Length | 93 |
Max. P | 0.635025 |
Location | 7,084,409 – 7,084,502 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -16.78 |
Consensus MFE | -14.53 |
Energy contribution | -14.01 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.87 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7084409 93 + 23771897 UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGGGCUCUUAACAAAAAUGUUAAGCAUU .....((.((((((.(((.......((((....)))).......))).))))))))((((....))))...(((((((....))))))).... ( -18.04) >DroSec_CAF1 96790 93 + 1 UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGAGCUCUUAACAAGAAUGUUAAGCAUU .....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... ( -14.84) >DroSim_CAF1 129485 93 + 1 UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGGGCUCUUAACAAGAAUGUUAAGCAUU .....((.((((((.(((.......((((....)))).......))).))))))))((((....))))...(((((((....))))))).... ( -18.04) >DroEre_CAF1 112982 93 + 1 UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCAGAGCUCUUAACAAAAAUGUUAAGCAUU .....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... ( -15.44) >DroYak_CAF1 112348 93 + 1 UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCAGAGCUCUUAACAAAAAUGUUAAGCAUU .....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... ( -15.44) >DroAna_CAF1 111424 91 + 1 UAACAUGAGCAUUUAGCGCAC--ACAAAUUAUAAUUUCAAAUAUCGCAAAGUGCCACUUGAGAGCGGGGCUCUUAACGAAAAUGUUAAGCAUU (((((((.((((((.(((...--..((((....)))).......))).)))))))..((((((((...)))))))).....))))))...... ( -18.90) >consensus UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGAGCUCUUAACAAAAAUGUUAAGCAUU .....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... (-14.53 = -14.01 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:54 2006