| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,079,558 – 7,079,657 |
| Length | 99 |
| Max. P | 0.965093 |
| Location | 7,079,558 – 7,079,657 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 74.01 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -14.73 |
| Energy contribution | -14.07 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7079558 99 - 23771897 GCUUUGACAUUGACUUGUGGUUUCAGUUGCCGCCACUGCCGCAUUUCAAGUUUU-CAGCUGCU----CAGCUUUUCAGCUCUUUUUUUUUAUUGUAGCUUCCAA- .....(((.((((..(((((...((((.......)))))))))..)))))))..-.((((((.----.((((....)))).............)))))).....- ( -19.46) >DroSec_CAF1 92046 93 - 1 GCUUUGACAUUGACUUGUGGUUUCAGUUGCCGCCACUGCCGCAUUUCAAGUUUU-CAGCUGCU----CAGCUUUUUAGCUCUUUUUUUU------AGCUUCCAA- (((..(((.((((..(((((...((((.......)))))))))..)))))))..-.)))....----.((((....)))).........------.........- ( -18.90) >DroAna_CAF1 107182 89 - 1 GGUCUGACAUUGACUUGUGGUUUCAGUUGC---CACUGCCGCAUUUCAAGUUAUUCUAUUUCUUCAACAUCUUUUCGGAUC-------------CGAGAUCCGAG ((..((((.((((..(((((...((((...---.)))))))))..))))))))..)).................(((((((-------------...))))))). ( -24.10) >consensus GCUUUGACAUUGACUUGUGGUUUCAGUUGCCGCCACUGCCGCAUUUCAAGUUUU_CAGCUGCU____CAGCUUUUCAGCUCUUUUUUUU______AGCUUCCAA_ .....(((.((((..(((((...((((.......)))))))))..)))))))................((((....))))......................... (-14.73 = -14.07 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:49 2006