Locus 2523

Sequence ID 3L_DroMel_CAF1
Location 7,078,535 – 7,078,628
Length 93
Max. P 0.890347
window3918

overview

Window 8

Location 7,078,535 – 7,078,628
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 98.57
Mean single sequence MFE -14.43
Consensus MFE -14.02
Energy contribution -14.13
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.06
Structure conservation index 0.97
SVM decision value 0.96
SVM RNA-class probability 0.890347
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7078535 93 - 23771897
CAAUCCCCAAUCCGCGAUCCACAACAAUCGCAGCGAUCCUCAUCACAGCGCCAACUCGAACUUGAACUACAUUGCAUUGGACAUCAAAAUAAA
......(((((..(((((........))))).(((((.....(((...((......))....))).....))))))))))............. ( -14.90)
>DroSec_CAF1 91025 93 - 1
CAAUCCCCAUUCCGCGAUCCACAACAAUCGCAGCGAUCCUCAUCACAGCGCCAACUCGAACUUGAACUACAUUGCAUUGGACAUCAAAAUAAA
..........((((((((........))))).(((((.....(((...((......))....))).....)))))...)))............ ( -13.80)
>DroSim_CAF1 123632 93 - 1
CAAUCCCCGAUCCGCGAUCCACAACAAUCGCAGCGAUCCUCAUCACAGCGCCAACUCGAACUUGAACUACAUUGCAUUGGACAUCAAAAUAAA
......(((((..(((((........))))).(((((.....(((...((......))....))).....))))))))))............. ( -14.60)
>consensus
CAAUCCCCAAUCCGCGAUCCACAACAAUCGCAGCGAUCCUCAUCACAGCGCCAACUCGAACUUGAACUACAUUGCAUUGGACAUCAAAAUAAA
......(((((..(((((........))))).(((((.....(((...((......))....))).....))))))))))............. (-14.02 = -14.13 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:48 2006