Locus 2522

Sequence ID 3L_DroMel_CAF1
Location 7,077,514 – 7,077,627
Length 113
Max. P 0.797983
window3917

overview

Window 7

Location 7,077,514 – 7,077,627
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 85.52
Mean single sequence MFE -36.03
Consensus MFE -25.09
Energy contribution -26.27
Covariance contribution 1.19
Combinations/Pair 1.09
Mean z-score -1.99
Structure conservation index 0.70
SVM decision value 0.61
SVM RNA-class probability 0.797983
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7077514 113 + 23771897
CGAUCGUUGGGGUGUGGCUGUUGCAAUUGCAAUUGCGAAUCACUUGCCACAACCACAAGCUGCACCGCACCGCACUGCACCGUAAGGUUAAAGCCAACCCGACAAGCUAUUAA
.....((((((.(((((.(((.((((((((....)))).....)))).))).))))).((((((..((...))..)))(((....)))...)))...)))))).......... ( -35.90)
>DroSec_CAF1 89993 108 + 1
CGAUCGUUGGGGUGUGGCUGUUGCAAUUGCAUUUGCGAAUCACUUGCCACAACCACAAGUCGCACCGCACC-----GCACCGUAAGGUUAGAGCCAACCCGACAAGCUAUUAA
.....((((((...(((((...((...(((...(((((....((((.........)))))))))..)))..-----))(((....)))...))))).)))))).......... ( -33.80)
>DroSim_CAF1 122650 108 + 1
CGAUCGUUGGGGUGUGGCUGUUGCAAUUGCAUUUGCGAAUCACUUGCCACAACCACAAGCCGCACCGCACC-----GCACCGUAAGGUUAGAGCCAACCCGACAAGCUAUUAA
.....((((((((((((((((.((((((((....)))).....)))).)).......)))))))))((.(.-----..(((....)))..).))....))))).......... ( -34.11)
>DroEre_CAF1 106146 94 + 1
CGAUCGCUGGGGUGUGGCUGUUGCAGU------GGCGAAUCACUUGCCACAACCACAAGCUGCACCGUUGG-----GC--------GUGAGAGCCAACCCGACAAGCCAUUAA
.(((.(((..((((..(((((.(..((------(((((.....)))))))..).)).)))..))))(((((-----(.--------((....))...)))))).))).))).. ( -40.30)
>consensus
CGAUCGUUGGGGUGUGGCUGUUGCAAUUGCAUUUGCGAAUCACUUGCCACAACCACAAGCCGCACCGCACC_____GCACCGUAAGGUUAGAGCCAACCCGACAAGCUAUUAA
.....((((((((((((((.((((((......))))))...................)))))))))...................(((....)))...))))).......... (-25.09 = -26.27 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:47 2006