Locus 2521

Sequence ID 3L_DroMel_CAF1
Location 7,077,046 – 7,077,138
Length 92
Max. P 0.625427
window3916

overview

Window 6

Location 7,077,046 – 7,077,138
Length 92
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 78.58
Mean single sequence MFE -17.85
Consensus MFE -8.68
Energy contribution -8.88
Covariance contribution 0.20
Combinations/Pair 1.20
Mean z-score -1.94
Structure conservation index 0.49
SVM decision value 0.19
SVM RNA-class probability 0.625427
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7077046 92 + 23771897
AGCCAGCGAUCGCGAUCACCAGCCGUCUACAACUGCAAACUACCAA--------------CACUCCACACUCCGUGGCAAUCCAAUCCAAUGGCAAAAAUGUUGCA
.((((..(((.(.(((.....((.((.....)).))..........--------------....((((.....))))..)))).)))...))))............ ( -15.20)
>DroSec_CAF1 89535 88 + 1
AAGCAGCGAUCGCGAUCACCAGC----UACAACUGCAAACUCCCAA--------------CACUCCACACUCCGUGGCAAUCAAAUCCAAUGGCAAAAAUGUUGCA
..((((((((....))).(((((----.......))..........--------------....((((.....)))).............))).......))))). ( -16.40)
>DroSim_CAF1 122192 88 + 1
AGCCAGCGAUCGCGAUCACCAGC----UAUGACUGCAAACUCCCAA--------------CACUCCACACUCCGUGGCAAUCCAAUCCAAUGGCAAAAAUGUUGCA
.((((..(((.(((.(((.....----..))).)))..........--------------....((((.....)))).......)))...))))............ ( -15.40)
>DroEre_CAF1 105687 85 + 1
AGCCAGCGAUCGCCAGCAG--UC----UACAACUGCAA---------------AACUCCGCACUCCGCACUCCAUGGCAAUCCGAUCCAAUGGCAAACAUGUUGCA
.((((..((((((((((((--(.----....)))))..---------------......((.....))......)))).....))))...))))............ ( -23.10)
>DroYak_CAF1 104605 100 + 1
AGCCAGCGAUCGCCAGCAG--UC----UACAACUGCAAACUGCCAACAAUCCAAACUCCACAAUCCAUACUCCAUGGCAAUCCAAUCCAAUGGCAAACAUGUUGCA
.((.((((...((((((((--(.----....)))))....(((((.............................)))))...........)))).....)))))). ( -19.15)
>consensus
AGCCAGCGAUCGCGAUCACCAGC____UACAACUGCAAACUCCCAA______________CACUCCACACUCCGUGGCAAUCCAAUCCAAUGGCAAAAAUGUUGCA
.((((((....))...................................................((((.....)))).............))))............ ( -8.68 =  -8.88 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:46 2006