| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,072,317 – 7,072,434 |
| Length | 117 |
| Max. P | 0.732003 |
| Location | 7,072,317 – 7,072,434 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.40 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -29.53 |
| Energy contribution | -29.87 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7072317 117 + 23771897 UGAUGUGGCAAUAAGCGAUAAUUAUGCGAGCACAACGCGGCGUAUGAGUAAUUUGCGUUUGCAAUUAGAAAAAAAGGCGCCGACG---UCGACGUGCUGAAAUGUUCAAAUUGCAAGUAU ..............((((...(((((((.((.....))..))))))).....)))).(((((((((.(((.....(((((((...---.))..)))))......))).)))))))))... ( -31.00) >DroSec_CAF1 84852 115 + 1 UGAUGUGGCAAUAAGCGAUAAUUAUGCGAGCACAACGCGGCGUAUGAGUAAUUUGCGCUUGCAAUUAGAA--ACAGGCGCCGACG---UCGACGUGCUGAAAUGUUCAAAUUGCGAGUAU ..............((((...(((((((.((.....))..))))))).....))))((((((((((.(((--...(((((((...---.))..)))))......))).)))))))))).. ( -34.10) >DroSim_CAF1 117548 115 + 1 UGAUGUGGCAAUAAGCGAUAAUUAUGCGAGCACAACGCGGCGUAUGAGUAAUUUGCGCUUGCAAUUAGAA--ACAGGCGCCGACG---UCGACGUGCUGAAAUGUUCAAAUUGCAAGUAU ..............((((...(((((((.((.....))..))))))).....))))((((((((((.(((--...(((((((...---.))..)))))......))).)))))))))).. ( -34.40) >DroEre_CAF1 100830 118 + 1 UGAUGUGGCACUAAGCGAUAAUUAUGCGAGCACAACGCGGCGUAUGAGUAAUUUGCGUUUGCAAUUAGAA--ACAGGCGCCGACGUCGUCGACGUGCUGAAAUGCUCAAAUUGCAAGUAU .((((((((.....((((...(((((((.((.....))..))))))).....))))(((((.........--.)))))))).)))))......(((((....(((.......)))))))) ( -30.90) >DroYak_CAF1 99560 115 + 1 UGAUGUGGCAAUAAGCGAUAAUUAUGCGAGCACAACGCGGCGUAUGAGUAAUUUGCGUUUGCAAUUAGAA--ACAGGCGCCGACG---UCGACGUGCUGAAAUGUUCAAAUUGCAAGUAU .((((((((.....((((...(((((((.((.....))..))))))).....))))(((((.........--.)))))))).)))---))...(((((..(((......)))...))))) ( -30.40) >DroAna_CAF1 101175 115 + 1 UGAUGGCGAAAUAAGCGAUCAUUUUGCGAGCACAACACGGCGUAUGAGUAAUUUGCGUUCGCAAUUAGAA--GCAGGCGCCGACU---UCGACGUGCUGAAAUGUUCAAAUUGCAAGUAU ((((.((.......)).)))).(((((((((((.....(((((.((..(...((((....))))....).--.)).)))))(...---.)...))))(((.....)))..)))))))... ( -32.00) >consensus UGAUGUGGCAAUAAGCGAUAAUUAUGCGAGCACAACGCGGCGUAUGAGUAAUUUGCGUUUGCAAUUAGAA__ACAGGCGCCGACG___UCGACGUGCUGAAAUGUUCAAAUUGCAAGUAU ..............((((...(((((((.((.....))..))))))).....)))).(((((((((.(((.....((((((((.....)))..)))))......))).)))))))))... (-29.53 = -29.87 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:41 2006