| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,066,750 – 7,066,857 |
| Length | 107 |
| Max. P | 0.656708 |
| Location | 7,066,750 – 7,066,857 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.89 |
| Mean single sequence MFE | -27.74 |
| Consensus MFE | -14.63 |
| Energy contribution | -14.30 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7066750 107 + 23771897 AAUCG----GGUUAACCAUUUUAUAAGGAAAUAAAGCGAUGGGGCAGCUACAAAUUGCGCUAA--------CCAAAACAACUUGCGGAGGUGUUAAUGAAAAAUUAA-CCCCUCGCCGCA .....----((((..(((((((((......))))...)))))(((.((........)))))))--------)).........((((((((.((((((.....)))))-).)))..))))) ( -26.90) >DroSec_CAF1 79371 106 + 1 UUUCG----GGUUAACCAUUUUAUAAGGAAAUAAAGCGAUGGGGCAGCUAUAAAUUGCGCUAA--------CCA-AACAACUUGCGGAGGUGUUAAUGAAAAAUUAA-CCCCUCGCCGCA .....----((((..(((((((((......))))...)))))(((.((........)))))))--------)).-.......((((((((.((((((.....)))))-).)))..))))) ( -26.90) >DroSim_CAF1 112083 106 + 1 UUUCG----GGUUAACCAUUUUAUAAGGAAAUAACGCGAUGGGGCAGCUACAAAUUGCGCUAA--------CCA-AACAACUUGCGGAGGUGUUAAUGAAAAAUUAA-CCCCUCGCCGCA ..(((----.((((.((.........))...)))).)))((.(((............(((...--------...-........)))((((.((((((.....)))))-).))))))).)) ( -27.54) >DroEre_CAF1 95218 104 + 1 -CUUG----GGGGCAGCAUUUUAUAAGGAAAUAAAGCGAUGGGGCAACCAAACA-AGCGCUAA--------CCA-AACAAGUUGCGGAGGUGUUAAUGAAAAAUUAA-CCCCUCGCCGCA -((((----.((..(((..(((((......)))))((....((....)).....-.)))))..--------)).-..)))).((((((((.((((((.....)))))-).)))..))))) ( -32.40) >DroYak_CAF1 93425 106 + 1 ACGUG----GGGAAGGCAGUUUAUAAGGAAAUAAAGCGAUGGGGCAACUAUAAAUUGCGCUAA--------CCA-AACAACUUGCGGAGGUGUUAAUGAAAAAUUAA-CCCCUCGCCGCA ..(((----(((..(((..(((((......)))))(((((.((....))....))))))))..--------)).-...........((((.((((((.....)))))-).)))).)))). ( -30.90) >DroAna_CAF1 96045 103 + 1 AUCCGAUGAUGUUAACCUUU----------------CGGCUGCGAAACUAUAAAUUGCGCUAAAUACCCCGCCG-AACAAUUGGCGUAGGUGCUAAUAAAAAAUUAGUCCCCUCCCUGGG ..((((.............)----------------)))..((((.........))))........((((((((-(....))))))..((..(((((.....)))))..))......))) ( -21.82) >consensus AUUCG____GGUUAACCAUUUUAUAAGGAAAUAAAGCGAUGGGGCAACUAUAAAUUGCGCUAA________CCA_AACAACUUGCGGAGGUGUUAAUGAAAAAUUAA_CCCCUCGCCGCA .......................................((.(((............(((.......................)))((((.((((((.....))))).).))))))).)) (-14.63 = -14.30 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:30 2006