| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,065,346 – 7,065,436 |
| Length | 90 |
| Max. P | 0.990595 |
| Location | 7,065,346 – 7,065,436 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 66.42 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -12.30 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.57 |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.990595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7065346 90 + 23771897 AGGAGGAGGAGUAACAGCAAUGACAAAACCUCGAGGGGCA--GGAUGGUUAAGUAUAGCGGAAGCGGCUUAAGGCAACCGGCAAUGGCAAAG .....((((.....((....))......)))).....((.--((.((.((((((...((....)).))))))..)).)).)).......... ( -21.00) >DroEre_CAF1 93651 74 + 1 -------GGAGCAACAGCAAUGACAAAACAUUGGGGGGCA--GGAUGGUUAAGUACAGCGGAAGCGGCUUAAGGCAACCGGCA--------- -------...((..(..(((((......))))).)..)).--((.((.((((((...((....)).))))))..)).))....--------- ( -20.70) >DroAna_CAF1 94927 82 + 1 AUGGGGGUCACAAGGAGCAAUGAGCAAAGAAGGAGUGGCCCUACACUGUUAAGUACGGCGGAAGCGGCUUAAGGAAAC-AGCA--------- ...((((((((.....((.....)).........))))))))......((((((...((....)).))))))(....)-....--------- ( -22.64) >consensus A_G_GG_GGAGAAACAGCAAUGACAAAACAUCGAGGGGCA__GGAUGGUUAAGUACAGCGGAAGCGGCUUAAGGCAACCGGCA_________ ................((..............................((((((...((....)).))))))(....)..)).......... (-12.30 = -12.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:25 2006