Locus 2511

Sequence ID 3L_DroMel_CAF1
Location 7,059,230 – 7,059,321
Length 91
Max. P 0.636084
window3892

overview

Window 2

Location 7,059,230 – 7,059,321
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 91.21
Mean single sequence MFE -27.63
Consensus MFE -22.48
Energy contribution -23.20
Covariance contribution 0.72
Combinations/Pair 1.13
Mean z-score -2.13
Structure conservation index 0.81
SVM decision value 0.21
SVM RNA-class probability 0.636084
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7059230 91 - 23771897
CUGCU-------UUUGGCUGCGAUUUUAUGGACGGGAAUUGAAUGAGUGUCUGCUGGAAAUGGAAAUUCAUUAAGACACUUACAUUCAGACGAGCAGG
(((((-------(....((((((((((.......)))))))..(((((((((....(((.(....))))....)))))))))....)))..)))))). ( -25.10)
>DroSec_CAF1 71886 91 - 1
CUGCU-------UUUGGCUGCGAUUUUAUGGCCGGGAAUUGAAUGAGUGUCUGCUGGAAAUGGAAAUUCAUUAAGACACUUACAUUUGGAUGAGCAGG
(((((-------(((((((..........))))))...(..(((((((((((....(((.(....))))....)))))))..))))..)..)))))). ( -27.40)
>DroSim_CAF1 104449 91 - 1
CUGCU-------UUUGGCUGCGAUUUUAUGGCCGGGAAUUGAAUGAGUGUCUGCUGGAAAUGGAAAUUCAUUAAGACACUUACAUUUGGAUGAGCAGG
(((((-------(((((((..........))))))...(..(((((((((((....(((.(....))))....)))))))..))))..)..)))))). ( -27.40)
>DroEre_CAF1 81780 91 - 1
CUGCU-------UUUGGCUGCGAUUUUAUGGCCGGGAAUUGAAUGAGUGUCUGCUGGAAAUGGAAAUUCAUUAAGACACUUACAUUCAGAGGAGCAGG
(((((-------(((((((..........)))).....((((((((((((((....(((.(....))))....)))))))..))))))))))))))). ( -30.80)
>DroYak_CAF1 80864 91 - 1
CUGCU-------UUUGGCUGCGAUUUUAUGGCCGGGAAUUGAAUAAGUGUCUGCUGGAAAUGGAAAUUCAUUAAGACACUUACAUUCAGAGGAGCAGG
(((((-------(((((((..........)))).....((((((((((((((....(((.(....))))....)))))))))..))))))))))))). ( -29.30)
>DroAna_CAF1 88096 96 - 1
CUGCUCUGCUCUUCUGACUGCGAUUUUAUGGGCGGGAAUUCAAUGAGUGUCUGCUGGAAAUGGAAAUUCAUUAAGACACUUACAGG--GACAGGAAGG
((((((((.........((((..........))))........(((((((((....(((.(....))))....)))))))))))))--).)))..... ( -25.80)
>consensus
CUGCU_______UUUGGCUGCGAUUUUAUGGCCGGGAAUUGAAUGAGUGUCUGCUGGAAAUGGAAAUUCAUUAAGACACUUACAUUCAGACGAGCAGG
(((((.......(((((((..........)))))))..((((((((((((((....(((.(....))))....)))))))..)))))))...))))). (-22.48 = -23.20 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:25 2006