| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,058,085 – 7,058,177 |
| Length | 92 |
| Max. P | 0.999064 |
| Location | 7,058,085 – 7,058,177 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 66.72 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -17.48 |
| Energy contribution | -17.98 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.68 |
| SVM decision value | 3.35 |
| SVM RNA-class probability | 0.999064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7058085 92 + 23771897 --------A-AAAGA----AAAAAAAGUGGAGAAGUGGGCCAGACACUCGGCCAAAUGCGCUACAGUUGGUUGAGUUAUGGCCAAAUAAAAGACGCACAGAGAAG --------.-.....----.......(((........(((((...((((((((((.((.....)).))))))))))..)))))..........)))......... ( -26.67) >DroWil_CAF1 118325 97 + 1 UGGUCGGGCGAAAGG----GGAACAAAUGC--AAAGGGCCUAGAACGUCGACUACAUGCUCUACAGUUGGUUGAAUUAUGGCCGAAUAAAA--UGUCUAGGCAAG (((((((.((....(----((..(......--...)..)))....)))))))))..((((..(((.((((((.......))))))......--)))...)))).. ( -21.90) >DroYak_CAF1 79710 83 + 1 ----------------------AAAAGUGGAGAAGUGGGCCAGACACUGGGCCAAAUGCGCUACAGUUGGUUGGGUUAUGGCCAAAUAAAAGACGCACAGAGAAG ----------------------....(((........(((((...(((.((((((.((.....)).)))))).)))..)))))..........)))......... ( -23.27) >DroAna_CAF1 87103 104 + 1 UGGGCCGGA-GAAAGGCCCGGAGAGCCAGAAAAAGUGGGCCAGACAUUGGGCCAAAUGCGCUACAGUUGGUUGAAUUAUGGCCGAAUAAAAGACGAGCACAGAAG .(((((...-....)))))((....))..........(((((...(((.((((((.((.....)).)))))).)))..)))))...................... ( -31.10) >consensus ________A_AAAGG____GGAAAAAGUGGAGAAGUGGGCCAGACACUCGGCCAAAUGCGCUACAGUUGGUUGAAUUAUGGCCAAAUAAAAGACGCACAGAGAAG .....................................(((((...((((((((((.((.....)).))))))))))..)))))...................... (-17.48 = -17.98 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:24 2006