Locus 251

Sequence ID 3L_DroMel_CAF1
Location 690,837 – 690,948
Length 111
Max. P 0.681052
window377

overview

Window 7

Location 690,837 – 690,948
Length 111
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -39.76
Consensus MFE -24.04
Energy contribution -27.27
Covariance contribution 3.22
Combinations/Pair 1.03
Mean z-score -1.77
Structure conservation index 0.60
SVM decision value 0.31
SVM RNA-class probability 0.681052
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 690837 111 - 23771897
GCUCAGC---CAGCCGGCCAAUAAGGAUGCCGAGCUGCGCCGGCGCAAGCUGAACUUUCUGGGCCACUGCCUGUACGAGUACAUCCAGAGGGCCCAGUUUUACCUCCACAGCGA
(((..((---((((((((..........)))).)))).))((((....))))......(((((((.(((..((((....))))..)))..)))))))............))).. ( -45.60)
>DroPse_CAF1 54061 105 - 1
CCAUAAC---GAUCUGCCAAACGAGG------AGUUGCGCAGGCGCAAGCUCAACUUCCUGGGCCACUGCCUGUACGAGUACAUACAAAGAGCCCAGUACUAUCUGCAUGCCGA
......(---(...(((.......((------(((((....(((....))))))))))(((((((..((..((((....))))..))..).))))))........)))...)). ( -29.80)
>DroGri_CAF1 63939 114 - 1
CAACAGCAAACAGCCAAACUCCAAGUUUGAGGAGCUGCGCAGACGUAAACUCAACUUUCUGGGCCACUGCCUCUACGAGUAUAUUCAGCGUGCCCAAUAUUAUCUAAAUGUGGA
.....(((......(((((.....))))).((.((.((((.((.(((.((((..(.....)(((....))).....)))).))))).)))))))).............)))... ( -23.20)
>DroSim_CAF1 46670 111 - 1
GCUGAGC---CAGCCGGCCAAUAAGGAAGCCGAGCUGCGCCGGCACAAGCUGAACUUUCUGGGCCACUGCCUGUAUGAGUAUAUCCAGAGGGCCCAGUUUUACCUCCACAGCGA
((((.((---((((((((..........)))).)))).))))))....((((......(((((((.(((..((((....))))..)))..)))))))...........)))).. ( -44.03)
>DroEre_CAF1 48414 111 - 1
GCUGAGC---CAGCCGGCCAACAAGGAUGCCGAGCUGCGCCGGCGCAAGCUGAACUUUCUGGGCCACUGCCUGUACGAGUACAUCCAGCGGGCCCAGUUUUACCUCCACAGCGA
((((.((---((((((((..........)))).)))).))((((....))))......(((((((.(((..((((....))))..)))..)))))))...........)))).. ( -48.90)
>DroYak_CAF1 50357 111 - 1
GCUGAGC---CAGCCGGCCAACAAGGAUGCCGAGCUGCGCCGGCGCAAGCUGAACUUUCUGGGCCACUGCCUGUACGAGUACAUCCAGAGGGCCCAAUUCUACCUCCACAGCGA
((((.((---((((((((..........)))).)))).))((((....)))).......((((((.(((..((((....))))..)))..))))))............)))).. ( -47.00)
>consensus
GCUGAGC___CAGCCGGCCAACAAGGAUGCCGAGCUGCGCCGGCGCAAGCUGAACUUUCUGGGCCACUGCCUGUACGAGUACAUCCAGAGGGCCCAGUUUUACCUCCACAGCGA
..........((((((((..........)))).))))(((((((....))))......(((((((.(((..((((....))))..))).).)))))).............))). (-24.04 = -27.27 +   3.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:31 2006