| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,055,832 – 7,055,939 |
| Length | 107 |
| Max. P | 0.524089 |
| Location | 7,055,832 – 7,055,939 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.03 |
| Mean single sequence MFE | -24.04 |
| Consensus MFE | -16.48 |
| Energy contribution | -17.25 |
| Covariance contribution | 0.77 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7055832 107 + 23771897 --------AAAAUAUGCGAAAGCAUGAAAAACGCGCCAAUAUAUCGCAGCGCGGAAAUAAUGCAAUUUGUGUGUCAACUUUUUAACGCACUCGUAGUUUUUUAUACGCACUCACA --------....(((((....))))).....(((((............))))).......(((.....((((((.((....)).))))))..(((........))))))...... ( -25.10) >DroVir_CAF1 93519 91 + 1 ----GAACAACAA--------------AAAGCGCGCCAAUAUAUCGCAGCGCGGAUAUAAUGCAAUUUGUGUGUGAACUUUUUAAU------GUAGUUUUUCACACACACACACA ----.........--------------...((((((.........)).))))...............((((((((((((.......------..)))...)))))))))...... ( -19.70) >DroSec_CAF1 68522 106 + 1 ---------AAAUAUACGAAAGCAUGAAAAACGCGCCAAUAUAUCGCAGCGCGGAAAUAAUGCAAUUUGUGUGUGAACUUUUUAACGCACUCGUAGUUUUUUAUACGCACUCACA ---------.....(((((..((((......(((((............)))))......)))).....((((((..........))))))))))).................... ( -24.40) >DroEre_CAF1 77539 111 + 1 ---GCAAAAAAAAAUG-AAAAGCAUGAAAAACGCGCCAAUAUAUCGCAGCGCGGAAAUAAUGCAAUUUGUGUGUGAACUUUUUAACGCACUCGUAGUUUUUUAUGCGCACUCACA ---(((.(((((((((-(...((((......(((((............)))))......)))).....((((((..........))))))))))..)))))).)))......... ( -26.90) >DroYak_CAF1 77484 114 + 1 UGGGUGAAAAAAAAUG-AAAACCAUGAAAAACGCGCCAAUAUAUCGCAGCGCGGAAAUAAUGCAAUUUGUGUGUGAACUUUUUAACGCACUCGUAGUUUUUUAUACGCACUCACA ((((((.........(-(((((.((((....(((((............)))))...............((((((..........)))))))))).))))))......)))))).. ( -26.96) >DroAna_CAF1 85142 110 + 1 ----CCCGAAAAAACG-CCAAGCAUGAAAAACGCGCCAAUAUAUCGCAGCGCGGAAAUAAUGCAAUUUGUGUGUGAACUUUUUAACGGACUCGUAGUUUUUUAUUCCCACUCGCG ----..........((-(...((((......(((((............)))))......)))).....(.(((.(((.....(((..(((.....)))..)))))).))).)))) ( -21.20) >consensus ______A_AAAAAAUG_AAAAGCAUGAAAAACGCGCCAAUAUAUCGCAGCGCGGAAAUAAUGCAAUUUGUGUGUGAACUUUUUAACGCACUCGUAGUUUUUUAUACGCACUCACA .....................((((......(((((............)))))......))))....((((((((((.......(((....))).....))))))))))...... (-16.48 = -17.25 + 0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:23 2006