Locus 2508

Sequence ID 3L_DroMel_CAF1
Location 7,047,853 – 7,047,944
Length 91
Max. P 0.583245
window3889

overview

Window 9

Location 7,047,853 – 7,047,944
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 94.00
Mean single sequence MFE -15.36
Consensus MFE -14.16
Energy contribution -14.00
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.11
Structure conservation index 0.92
SVM decision value 0.10
SVM RNA-class probability 0.583245
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7047853 91 - 23771897
ACUUAUUAUUCACUUAUUAUUGCCACGAUAAUCCCUAUCUUGUUUUAAUCAAAUUGAGUCGGGACUUAUCUCUCAUUGGCAUAACCAA-GAG
............(((.....(((((.(((((((((...(((..(((....)))..)))..)))).)))))......))))).....))-).. ( -15.30)
>DroSec_CAF1 60554 92 - 1
ACUUAUUAUUCACUUAUUAUUGCCACGAUAAUCCCUAUCUUGUUUUAAUCAAAUUGAGCCGGGACUUAUCUCUCAUUGGCAUAACCAAGGAG
.........((.(((.....(((((.(((((((((..((..((((.....)))).))...)))).)))))......))))).....))))). ( -15.90)
>DroSim_CAF1 93204 92 - 1
ACUUAUUAUUCACUUAUUAUUGCCACGAUAAUCCCUAUCUUGUUUUAAUCAAAUUGAGCCGGGACUUAUCUCUCAUUGGCAUAACCAAGGAG
.........((.(((.....(((((.(((((((((..((..((((.....)))).))...)))).)))))......))))).....))))). ( -15.90)
>DroEre_CAF1 69578 91 - 1
GCUUACUAUUCACGUAUUAUUGCCACGAUAAUCCCUAUCUUGUUUUAAUCAAAUUAAGUCGGGACUUAUCUCUCUUUGGCAUAACCAA-AUG
....................(((((.(((((((((...((((.(((....))).))))..)))).)))))......))))).......-... ( -15.00)
>DroYak_CAF1 68906 91 - 1
GCUUAUUAUUCACUUAUUAUUGCCACGAUAAUCCCUAUCUUGUUUUAAUCAAAUUGAGUCGGGACUUAUCUCUCGUUGGCAUAGCCGA-AAG
....................(((((((((((((((...(((..(((....)))..)))..)))).)))....))).))))).......-... ( -14.70)
>consensus
ACUUAUUAUUCACUUAUUAUUGCCACGAUAAUCCCUAUCUUGUUUUAAUCAAAUUGAGUCGGGACUUAUCUCUCAUUGGCAUAACCAA_GAG
....................(((((.(((((((((...((((.(((....))).))))..)))).)))))......)))))........... (-14.16 = -14.00 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:22 2006