| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,047,581 – 7,047,673 |
| Length | 92 |
| Max. P | 0.567135 |
| Location | 7,047,581 – 7,047,673 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.48 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -13.67 |
| Energy contribution | -15.12 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7047581 92 + 23771897 ---GUAAGCUGCUUAAAAGUUAA-AACAAUUUAAUAAAAAUUAAUGCCCACUGCACAGCAAUGUGCAAA-------UGCGGAGUAGAACUGCGCUUUUCAUUA ---(((..((((((....(((((-(....)))))).........(((....((((((....))))))..-------.)))))))))...)))........... ( -19.80) >DroGri_CAF1 82019 96 + 1 UCCGUAAGCUGCUUACAAAUUAAAAACAAUUUAAUAUCAAUUUGAGUCAGCCGCAUAAAAACACGGCCG-------AGUACAGCAGAAUUGCGCUUUUCUGUC ..(((((.((((((((..((((((.....))))))...........((.((((..........)))).)-------)))).)))))..))))).......... ( -19.10) >DroSec_CAF1 60283 92 + 1 ---GUAAGCUGCUUAAAAGUUAA-UACAAUUUAAUAAAAAUUAAUGCCCACUGCACAGCAAUGUGCAAA-------UGCGGAGCAGAACUGCGCUUUUCAUUA ---(((..((((((....(((((-......))))).........(((....((((((....))))))..-------.)))))))))...)))........... ( -21.90) >DroSim_CAF1 92932 92 + 1 ---GUAAGCUGCUUAAAAGUUAA-AACAAUUUCAUAAAAAUUAAUGCCCACUGCACAGCAAUGUGCAAA-------UGCGGAGUAGAACUGCGCUUUUCAUUA ---(((..((((((.........-...(((((.....)))))..(((....((((((....))))))..-------.)))))))))...)))........... ( -18.10) >DroEre_CAF1 69306 92 + 1 ---GUAAGCUGCUUAAAAGUUAA-AACAAUUUAAUAAAAAUUAAUGCCCACUGCACAGCAAUGUGCAAA-------UGCGGAGCAGAACUGCGCUUUUCAUUA ---(((..((((((....(((((-(....)))))).........(((....((((((....))))))..-------.)))))))))...)))........... ( -21.80) >DroYak_CAF1 68628 99 + 1 ---GUAAGCUGCUUAAAAGUUAA-AAUAAUUUAAUAAAAACUAAUGCCCACUGCACAGCAAUGUGCAUAGAAAAUGUGCGGAGCAGAACUGCGCUUUUCAUCA ---((..((.........(((((-(....))))))..........))..))((((((....))))))..(((((.((((((.......))))))))))).... ( -21.71) >consensus ___GUAAGCUGCUUAAAAGUUAA_AACAAUUUAAUAAAAAUUAAUGCCCACUGCACAGCAAUGUGCAAA_______UGCGGAGCAGAACUGCGCUUUUCAUUA ...(((..((((((..(((((......)))))...................((((((....)))))).............))))))...)))........... (-13.67 = -15.12 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:21 2006