| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,047,227 – 7,047,326 |
| Length | 99 |
| Max. P | 0.681907 |
| Location | 7,047,227 – 7,047,326 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 89.23 |
| Mean single sequence MFE | -23.16 |
| Consensus MFE | -19.24 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7047227 99 + 23771897 UUCU-CGCCUAAAAGGCCCAUCAGCCACCUUUUCUAACAAGAAGAACGAGGAAAACGUUUU-CGGUAAACAAAAAUAUGUCAUGUUUACUCAGUGAGCAGU ((((-((.......(((......)))...((((((....)))))).))))))....((((.-.((((((((...........))))))))....))))... ( -21.20) >DroSec_CAF1 59937 99 + 1 UUCU-GGCCUAAAAGGCCCAUCAGCCACCUUUUCCAACAAGAAGAACGAGGAAAACGUUAU-GGGUAAACAAAAAUAUGUCAUGUUUACUCAGUGAGCAGU ....-((((.....)))).....(((((.((((((..............)))))).....(-(((((((((...........))))))))))))).))... ( -25.14) >DroSim_CAF1 92585 99 + 1 UUCU-GGCCUAAAAGGCCCAUCAGCCACCUUUUCUAACAAGAAGAACGAGGAAAACGUUUU-GGGUAAACAAAAAUAUGUCAUGUUUACUCAGUGAGCAGU ....-((((.....)))).....(((((.((((((....))))))...............(-(((((((((...........))))))))))))).))... ( -24.50) >DroEre_CAF1 68963 99 + 1 UUCU-GGCCUAAAAGGCCCAUCAGCCACCUAUUCUAACAAGAAAAACGAGGAAAACGUUUU-GUGUAAACAAAAAUAUGUCAUGUUUACUCAGUGAGCAGU ....-((((.....)))).....(((((...((((....))))....(((..((((((..(-((((........)))))..)))))).))).))).))... ( -21.50) >DroYak_CAF1 68288 99 + 1 UUCU-GGCCUAAAAGGCCCAUCAGCCACCUUUUCUAACAAGAAAGACGAGAAAAACGUUUU-GAGUAAACAAAAAUAUGUCAUGUUUACUCAGUGAGCAGU ....-((((.....)))).....((((((((.(((........))).)))..........(-(((((((((...........))))))))))))).))... ( -25.30) >DroAna_CAF1 76891 89 + 1 UCCUUGGCCUAAAAGCCCCAUCAGCAGCCC------------AAAACGUGGAAAACGUUUUCGGGUAAACAAAAAUAUGCCAUGUUUACUCAGCGAGCAGU .....(((......)))......((.((..------------(((((((.....))))))).(((((((((...........))))))))).))..))... ( -21.30) >consensus UUCU_GGCCUAAAAGGCCCAUCAGCCACCUUUUCUAACAAGAAAAACGAGGAAAACGUUUU_GGGUAAACAAAAAUAUGUCAUGUUUACUCAGUGAGCAGU .....((((.....)))).....(((((..............((((((.......)))))).(((((((((...........))))))))).))).))... (-19.24 = -19.55 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:20 2006