Locus 2503

Sequence ID 3L_DroMel_CAF1
Location 7,041,193 – 7,041,301
Length 108
Max. P 0.993408
window3884

overview

Window 4

Location 7,041,193 – 7,041,301
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -24.06
Consensus MFE -21.63
Energy contribution -22.47
Covariance contribution 0.84
Combinations/Pair 1.13
Mean z-score -1.88
Structure conservation index 0.90
SVM decision value 2.40
SVM RNA-class probability 0.993408
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7041193 108 + 23771897
GUUUCGUUUAGCAACGUCCUCUGCACUUAUAAGGCCAAAAUAUAGUCGGAACUAUGUUUUACAUCAAUUUAAAGUUCAUAAAAGUGCAGUUUAAAGUUGCUUCAGUAA
.....(...((((((.....((((((((.((.(..(((((((((((....)))))))))).............)..).)).))))))))......)))))).)..... ( -25.01)
>DroSec_CAF1 53939 108 + 1
GUUUCGUUUAGCAACGCCCUCUGCACUUUUAAGGCCAAAAUAUAGUCGGAACUAUGUUUUACAUUAAUUUAAAGUUCAUAAAAGUGCAAUUUAAAGUUGCUUCGGCAA
...(((...((((((......((((((((((.(..(((((((((((....))))))))))...(((...))).)..).)))))))))).......)))))).)))... ( -27.02)
>DroSim_CAF1 86047 108 + 1
GUUUCGUUUAGCAACGCCCUCUGCACUUUUAAGGCCAAAAUAUAGUCGGAACUAUGUUUUACAUCAAUUUAAAGUUCAUAAAAGUGCAAUUUAAAGUUGCUUCAGAAA
.((((....((((((......((((((((((.(..(((((((((((....)))))))))).............)..).)))))))))).......))))))...)))) ( -27.13)
>DroEre_CAF1 62754 108 + 1
GUUUGGUUUAGCAACGCUCUCUGCACUUAUAGGGCCAAAAUAUAGUCAGAACUGUGUCUUACAUCAAUUUAAAGUUCAUAAAAGUGCAAUUUAAAGUUGCUUCUGCAA
.....((..((((((......(((((((....(((.........))).(((((...................)))))....))))))).......))))))...)).. ( -22.43)
>DroYak_CAF1 62015 107 + 1
GUUUCGUUUAGCAACGCACUCUGCACUUUUAAGGCCAGAAUAUAGUCAGAACUA-GUUUUACAUCAAUUUAAAGUUCAUAGAAGUGCAAUUUAAAGUUCCUUCGGCAA
...(((...((.(((......((((((((((.(((.........))).(((((.-.................))))).)))))))))).......))).)).)))... ( -18.69)
>consensus
GUUUCGUUUAGCAACGCCCUCUGCACUUUUAAGGCCAAAAUAUAGUCGGAACUAUGUUUUACAUCAAUUUAAAGUUCAUAAAAGUGCAAUUUAAAGUUGCUUCAGCAA
...(((...((((((......((((((((((.(..(((((((((((....)))))))))).............)..).)))))))))).......)))))).)))... (-21.63 = -22.47 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:17 2006