Locus 2502

Sequence ID 3L_DroMel_CAF1
Location 7,039,388 – 7,039,478
Length 90
Max. P 0.985044
window3883

overview

Window 3

Location 7,039,388 – 7,039,478
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 85.37
Mean single sequence MFE -17.10
Consensus MFE -14.74
Energy contribution -14.72
Covariance contribution -0.03
Combinations/Pair 1.18
Mean z-score -3.38
Structure conservation index 0.86
SVM decision value 1.99
SVM RNA-class probability 0.985044
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7039388 90 + 23771897
AAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUCAGCAAAACCAGCCACCCAAC--CACCACCCA--UUUGGCAAAUA
.........((((((((........((((((....))))))..((((....((.......)).....)))--)........--...)))))))) ( -17.30)
>DroSec_CAF1 52089 92 + 1
AAUUUCUCAUAUUUGUUUACAAUUCGUGCAUACAAAUGCGCAAGGUUAUCAGCCAAACCAGCCACCCAACCCCACCUCCCA--UUUGACAAAUA
.........((((((((........((((((....))))))..((((........))))......................--...)))))))) ( -15.40)
>DroSim_CAF1 84211 90 + 1
AAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUCAGCCAAACCAGCCACCCAAC--CACCUCCCA--UUUGACAAAUA
.........((((((((........((((((....))))))..((((........))))...........--.........--...)))))))) ( -17.30)
>DroEre_CAF1 61103 91 + 1
AAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUCAGCCAAACCAGCCACCCACC-UUGCCUCCCA--UCUGGCAAAUA
..............((((.......((((((....))))))..(((.....)))))))............-(((((.....--...)))))... ( -19.20)
>DroYak_CAF1 60305 81 + 1
AAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAACAGCCAA-----CCACCCAC------CUCCCA--UUUGGCAAAUA
.........((((((((........((((((....))))))..(((.....)))..-----........------......--...)))))))) ( -16.30)
>DroAna_CAF1 69766 93 + 1
AAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUG-CUGCCACACCUCCCAGCUAUCCGCAUAUCCGACCUCCAACAAUCA
............(((((......((((((((....))))))..((..(-(((..........))))...))........)).....)))))... ( -17.10)
>consensus
AAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUCAGCCAAACCAGCCACCCAAC__CACCUCCCA__UUUGACAAAUA
.........((((((((........((((((....))))))..(((.....)))................................)))))))) (-14.74 = -14.72 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:16 2006