Locus 250

Sequence ID 3L_DroMel_CAF1
Location 688,130 – 688,231
Length 101
Max. P 0.519355
window376

overview

Window 6

Location 688,130 – 688,231
Length 101
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 83.68
Mean single sequence MFE -38.32
Consensus MFE -23.50
Energy contribution -24.56
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -2.43
Structure conservation index 0.61
SVM decision value -0.03
SVM RNA-class probability 0.519355
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 688130 101 - 23771897
UCUUUUUCCCUCGAG--UAGCUGGGGUUCGGCAUA-------------UAGUACAUAUGCCAAUCGCAGGACUGAGAGGAUGUAAGGCCGAAGGGCAUGUAAA-AUGUCCAAUUGGG
((((..((((((.((--(..(((.((((.((((((-------------(.....))))))))))).))).)))))).)))...))))((((.((((((.....-))))))..)))). ( -38.50)
>DroSec_CAF1 43681 113 - 1
UCUUUUUCCCUCGAG--UAGCUGGGGUUCGGCAUAUA-UAGUACGGCAUAGUACAUAUGCCAAUCGCAGGACUGAGAGGAUGUAAGGCCGAAGGGCAUGUAAA-AUGUCCAAUUGGG
((((..((((((.((--(..(((.((((.(((((((.-..((((......))))))))))))))).))).)))))).)))...))))((((.((((((.....-))))))..)))). ( -42.60)
>DroSim_CAF1 43967 113 - 1
UCUUUUUCCCUCGAG--UAGCUGGGGUUCGGCAUAUA-UAGUACGGCAUAGUACAUAUGCCAAUCGCAGGACUGAGAGGAUGUAAGGCCGAAGGGCAUGUAAA-AUGUCCAAUUGGG
((((..((((((.((--(..(((.((((.(((((((.-..((((......))))))))))))))).))).)))))).)))...))))((((.((((((.....-))))))..)))). ( -42.60)
>DroEre_CAF1 45688 116 - 1
UCUUUUUCCCUCGAGUGUAGCUGGGCUUCGGCAUAUA-UAGCACGGUAUAGUACAUAUGCCAAUCGCAGGACUGAGAGGAUGUAACGCCGAAGGGCAUGUAAAUAUGUCCAAUUGGG
((((..(((..(((..((.((((.((....)).....-))))))((((((.....))))))..)))..)))..))))((((((((((((....)))..))...)))))))....... ( -37.20)
>DroYak_CAF1 47595 115 - 1
UCUUUUUCCCUCGAGUGUAGCUGGGGUUCGGCAUAUA-UAG-ACGGUCUAGUACAUAUGCCAAUCGCAGGACUGAGAGGAUGUGAAGCCGAAGGGCAUGUAAAAAUGUCCAAUUGGG
.((((.((((((.(((....(((.((((.(((((((.-(((-.....)))....))))))))))).))).)))))).)))...))))((((.((((((......))))))..)))). ( -37.80)
>DroAna_CAF1 45754 109 - 1
CCCUGCCGGGUCGAGUGUUUCUGGGGUUCUGUAUAUGGUAG------UUAGUUCAUGUGCCA-UCACAGGGACG-GAAGAUGUACAACCGAAGGGCAUGUAAUGAUGUACAAUAGGG
(((((....(((...(((..(((.(((...((((((((...------.....)))))))).)-)).)))..)))-...)))(((((.((....))(((...))).)))))..))))) ( -31.20)
>consensus
UCUUUUUCCCUCGAG__UAGCUGGGGUUCGGCAUAUA_UAG_ACGG_AUAGUACAUAUGCCAAUCGCAGGACUGAGAGGAUGUAAGGCCGAAGGGCAUGUAAA_AUGUCCAAUUGGG
........((((........(((.((((.(((((((..................))))))))))).)))......))))........((((.((((((......))))))..)))). (-23.50 = -24.56 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:30 2006