| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,011,488 – 7,011,596 |
| Length | 108 |
| Max. P | 0.771703 |
| Location | 7,011,488 – 7,011,596 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -14.13 |
| Energy contribution | -15.97 |
| Covariance contribution | 1.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7011488 108 + 23771897 GCAUAAGAUUAAGAACAUCGGGAGACACAUUUUUUGUGUGUACCCAUCCAUGUAGCCUAUUGGAAUGUCGGUAGAC-UC-CC--CACAACCCAAACUUAAUCCCAAUCCCAA ......(((((((......((((.(((((.....))))).).)))..............((((..(((.((.....-..-))--.)))..)))).))))))).......... ( -25.10) >DroSec_CAF1 24423 86 + 1 GCAUAAGAUUAAGAACAUCGGGAGACACAUUUUUUGUGUGUACCCAUCCAUGUA----------------------CCC-CC--CUCAAACCAAACUUAAUC-CAAUCCCAA ......(((((((......((((.(((((.....))))).).))).....((..----------------------...-..--..)).......)))))))-......... ( -16.20) >DroSim_CAF1 56356 108 + 1 GCAUAAGAUUAAGAACAUCGGGAGACACAUUUUUUGUGUGUACCCAUCCAUGUAGCCUAUUGGAAUGUCGGUGGACCCC-CC--CUCAAACCAAACUUAAUC-CAAUCCCAA ......(((((((......((((.(((((.....))))).).)))..............((((..((..((.((...))-))--..))..)))).)))))))-......... ( -25.80) >DroEre_CAF1 29147 104 + 1 GCAUAAGAUUAAGAACAUCG-GAGACACAUUUUUUGUGUGUACCCAUCCAUGUAGCCUAUUGGAAUGUCGGUAGCC-CC-----CAGACCCAAAACUUAAUC-CAAUCCCAA ......(((((((.((((.(-((.((((((.....)))))).....)))))))......((((...(((((.....-.)-----).)))))))..)))))))-......... ( -24.40) >DroYak_CAF1 30245 107 + 1 GCAUAAGAUUAAGAACAUCGGGAGACACAUUUUUUGUGUGUACCCAUCCAUGCAGCCUAUUGGAAUGUCGGUAGAC-CC-CC--AAUACCCAAAACUUAAUC-CAAUCCCAA ......(((((((......((((.(((((.....))))).).))).........(..((((((...(((....)))-..-))--))))..)....)))))))-......... ( -26.30) >DroAna_CAF1 42933 98 + 1 GCAUAAGAUUAAGAACAUCGGGAGACACAUUUUUUGUGUG--CCCAUCCAUGUCG-GUAUUGGAAUGC---UAGCC-CCAGCCUAAGCCCCAGCCCU-------GGGCCCAG ((((...............(((..(((((.....))))).--))).((((.....-....))))))))---.....-...(((((.((....))..)-------)))).... ( -25.00) >consensus GCAUAAGAUUAAGAACAUCGGGAGACACAUUUUUUGUGUGUACCCAUCCAUGUAGCCUAUUGGAAUGUCGGUAGAC_CC_CC__CACAACCAAAACUUAAUC_CAAUCCCAA ......(((((((......((((.(((((.....))))).).))).((((..........))))...............................))))))).......... (-14.13 = -15.97 + 1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:06 2006