Locus 2494

Sequence ID 3L_DroMel_CAF1
Location 6,993,226 – 6,993,334
Length 108
Max. P 0.824539
window3870

overview

Window 0

Location 6,993,226 – 6,993,334
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 84.28
Mean single sequence MFE -27.82
Consensus MFE -17.46
Energy contribution -17.98
Covariance contribution 0.52
Combinations/Pair 1.09
Mean z-score -2.41
Structure conservation index 0.63
SVM decision value 0.69
SVM RNA-class probability 0.824539
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6993226 108 + 23771897
AAGCGGGUCAAAUACACUUGCCGACAUCUCAAUAAUCAGAGAUGGCAAGAGGCUAUCGGUACGUGGGAAAAUAACAGGGUACAGACCAAAUUUUUAGGGUCUCACUUC
(((.(((.(.....(((.((((((((((((........))))))((.....))..)))))).))).((((((.....(((....)))..))))))...).))).))). ( -27.80)
>DroSec_CAF1 6783 108 + 1
AAGCGGGUCAAAUACACUUGCCGACAUCUCAAUAAUCAGAGAUGGCAAGAGGCUAUGUGUACUUAGGAAAACAACAGGGUACAAACCUAAUUUUUAGGGUCUCACUUC
..((.((.(((......)))))..((((((........))))))))..(((((....((((((..(........)..))))))..((((.....)))))))))..... ( -30.10)
>DroSim_CAF1 9059 108 + 1
AAGCGGGUCAAAUACACUUGCCGACAUCUCAAUAAUCAGAGAUGGCAAGAGGCUAUGUGUACUUAGGAAAACAACAGGGUACAAACCUAAUUUUUAGGGUCUCACUUC
..((.((.(((......)))))..((((((........))))))))..(((((....((((((..(........)..))))))..((((.....)))))))))..... ( -30.10)
>DroEre_CAF1 10944 94 + 1
AAGCGGGUCAAAUACACUGGCCGACAUCUCA---AUCAGAGAUGGCAAGCGCCU----------UGGUAAAAAUCAGGGUACAAACCUAAUU-UAAUGAUCUCACUUC
..((.(((((.......)))))..((((((.---....))))))))..(..(((----------((((....)))))))..)..........-............... ( -25.60)
>DroYak_CAF1 10951 97 + 1
AAGCGGGUCAAAUAUACUUGCCGACAACUCAAUAAUCAGAGAUGGCAAGUGACU----------AGGAAAAAACCAGGAUACAGACCCAAUU-UUAAGGUCUCACUUC
....(((((.....(((((((((....(((........))).))))))))).((----------.((......)).)).....)))))....-............... ( -25.50)
>consensus
AAGCGGGUCAAAUACACUUGCCGACAUCUCAAUAAUCAGAGAUGGCAAGAGGCUAU__GUAC_UAGGAAAAAAACAGGGUACAAACCUAAUUUUUAGGGUCUCACUUC
(((.(((((.......(((((((...((((........)))))))))))...........................((((....)))).........)).))).))). (-17.46 = -17.98 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:03 2006