Locus 2493

Sequence ID 3L_DroMel_CAF1
Location 6,987,790 – 6,987,886
Length 96
Max. P 0.607245
window3869

overview

Window 9

Location 6,987,790 – 6,987,886
Length 96
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 80.04
Mean single sequence MFE -26.68
Consensus MFE -20.81
Energy contribution -20.87
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.51
Structure conservation index 0.78
SVM decision value 0.15
SVM RNA-class probability 0.607245
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6987790 96 - 23771897
-AGAAUCGAGUGAGUUAUUCUCCGGCCAACGGGGGGUAUACGCAAUACUCAAGCCCACAUGGCGUAUACGAAUCGCUAAGGGAAGUUUGAGCGCUUU
-......(((((.(((((((((((.....))))))))).))......(((((((((.(.(((((.........))))).)))..)))))))))))). ( -30.30)
>DroSim_CAF1 1106 95 - 1
-AGAAUCGAGUGAGUUAUUCUCCGGCCAACGGGGGGUAUACGCAAUACUCAAGCCCACAUGGCGUAUACGAA-CGCCAAGGGAAGUUUGAGCGCUUU
-......(((((.(((((((((((.....))))))))).))......(((((((((.(.((((((......)-))))).)))..)))))))))))). ( -34.80)
>DroEre_CAF1 5463 76 - 1
CAAAACCGAGUGAGUUUUUCUCCGGCCAACGGGGGGUAUACGCAAUA---AAGCCCACAUGGCGUAUACGA------------------UACGCUUU
.......(((((......((((((.....))))))((((((((....---...........))))))))..------------------..))))). ( -22.36)
>DroYak_CAF1 5424 75 - 1
-AGAACCGAGUGAGUUAUUUGCCGGCCAACGGGGGGUAUACGCAAUA---AAGCCCACAUGGCGUAUACGA------------------UACGCUUU
-......(((((.(((..((.(((.....))).))((((((((....---...........))))))))))------------------).))))). ( -19.26)
>consensus
_AGAACCGAGUGAGUUAUUCUCCGGCCAACGGGGGGUAUACGCAAUA___AAGCCCACAUGGCGUAUACGA__________________AACGCUUU
.......(((((......((((((.....))))))((((((((..................))))))))......................))))). (-20.81 = -20.87 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:02 2006