| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,984,316 – 6,984,435 |
| Length | 119 |
| Max. P | 0.633336 |
| Location | 6,984,316 – 6,984,435 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.44 |
| Mean single sequence MFE | -21.50 |
| Consensus MFE | -20.18 |
| Energy contribution | -19.97 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6984316 119 - 23771897 UAUGAUUUUUUAUAAUUUCCAUCAAAUCAAAUACAAACAUGAUUUGUGACUCACUGCCUUUGCAGUGUUUUAUAUUGCUUGGUAAUUUCUUUAAAAAUAGAAAACAUGAGAAU-AGUGAA (((((....))))).....((.(((((((..........)))))))))..((((((((...(((((((...)))))))..)))..(((((........)))))..........-))))). ( -21.80) >DroSec_CAF1 54143 120 - 1 UAUGAUUUUUUAUUAUUUCCAUCAAAUCAAAUACAAACAUGAUUUGUGACUCACUGCCUUUGCAUUGUUUCAUAUUACUUGGCAAUUUCUUUAAAAAUAGAAAACAUGAGAACAAGUGAA (((((..............((.(((((((..........)))))))))...((.(((....))).))..)))))(((((((.((.(((((........)))))...))....))))))). ( -18.30) >DroSim_CAF1 53916 119 - 1 UAUGAUUUUUUAAUAUAUCCAUCAAAUCAAAUACAAA-AUGAUUUGUGACUCACUGCCUUUGCAGUGUUUCAUAUUACUUGGCAAUUUCUUUAAAAAUAGAAAACAUGAGAACAAGUGAA (((((..............((.(((((((........-.)))))))))...((((((....))))))..)))))(((((((.((.(((((........)))))...))....))))))). ( -24.40) >consensus UAUGAUUUUUUAUUAUUUCCAUCAAAUCAAAUACAAACAUGAUUUGUGACUCACUGCCUUUGCAGUGUUUCAUAUUACUUGGCAAUUUCUUUAAAAAUAGAAAACAUGAGAACAAGUGAA (((((..............((.(((((((..........)))))))))...((((((....))))))..)))))(((((((.((.(((((........)))))...))....))))))). (-20.18 = -19.97 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:58 2006