Locus 2489

Sequence ID 3L_DroMel_CAF1
Location 6,983,136 – 6,983,256
Length 120
Max. P 0.656832
window3858

overview

Window 8

Location 6,983,136 – 6,983,256
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.86
Mean single sequence MFE -26.47
Consensus MFE -20.93
Energy contribution -21.60
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.09
Structure conservation index 0.79
SVM decision value 0.26
SVM RNA-class probability 0.656832
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6983136 120 - 23771897
CAAACUUGGGCGUGGACGGAGCUCGGCUCAUGUAAAUGCCCACGAAAGUGUCGAAAGAACGGUCAUAAUAAAUAAAACACCCCCCGACUGGGCCAAAAAAAAAAAAAGAAUAACCCAGCU
......(((((((..(((((((...)))).)))..))))))).((..((.((....))))..)).....................(.(((((.....................)))))). ( -30.10)
>DroSec_CAF1 52957 106 - 1
CAAACUUGGGCGUGGACGGAGCGCGGCUCAUUUAAAUACCCACGAAAGUGUCGAAAGAACGGUCAUAAUAAAUAAAACUCCCCCCG------CCAAAAAAAAAA--------UCACAGCA
........((((.((...((((...))))(((((...((((((....)))((....))..))).....))))).........))))------))..........--------........ ( -23.60)
>DroSim_CAF1 52712 106 - 1
CAAACUUGGGCGUGGACGGAGCGCGGCUCAUGUAAAUGCCCACGAAAGUGUCGAAAGAACGGUCAUAAUAAAUAAAACUCCCCCCG------CCAAAAAAAAAA--------UCACAGCA
........((((.((..((((...(((..........)))(((....)))((....))...................)))).))))------))..........--------........ ( -25.70)
>consensus
CAAACUUGGGCGUGGACGGAGCGCGGCUCAUGUAAAUGCCCACGAAAGUGUCGAAAGAACGGUCAUAAUAAAUAAAACUCCCCCCG______CCAAAAAAAAAA________UCACAGCA
......(((((((..(((((((...)))).)))..))))))).((..((.((....))))..))........................................................ (-20.93 = -21.60 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:52 2006