| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,982,976 – 6,983,096 |
| Length | 120 |
| Max. P | 0.828607 |
| Location | 6,982,976 – 6,983,096 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.89 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -26.95 |
| Energy contribution | -26.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.76 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6982976 120 - 23771897 UUCCGCUUUUGCAUCCGCUGCUCAGCAUAACCAUGGCAGGCCAUUUGGCCCGAACCGUAUGCAAUUCCCAAAACCAAUAAGCAAUCAAAUUUUAUUCAAACUAGCAGCAACAGCUGGCAC ....(((...((....((((((..(((((.......(.((((....)))).).....))))).............((((((.........))))))......))))))....)).))).. ( -26.80) >DroSec_CAF1 52797 120 - 1 UUCCGCUUUUGCAUCCGCUGCGCAGCAUAACCAUGGCAGGCCAUUUGGCCCGAACCGUAUGCAAUUCCCAAAACCAAUAAACAAUCAAAUUUUAUUCAAACUAGCAGCAACAGCUGGCAC ....(((...((....(((((...(((((.......(.((((....)))).).....))))).............((((((.........)))))).......)))))....)).))).. ( -27.10) >DroSim_CAF1 52552 120 - 1 UUCCGCUUUUGCAUCCGCUGCGCAGCAUAACCAUGGCAGGCCAUUUGGCCCGAACCGUAUGCAAUUCCCAAAACCAAUAAGCAAUCAAAUUUUAUUCAAACUAGCAGCAACAGCUGGCAC ....(((...((....(((((...(((((.......(.((((....)))).).....))))).............((((((.........)))))).......)))))....)).))).. ( -26.80) >consensus UUCCGCUUUUGCAUCCGCUGCGCAGCAUAACCAUGGCAGGCCAUUUGGCCCGAACCGUAUGCAAUUCCCAAAACCAAUAAGCAAUCAAAUUUUAUUCAAACUAGCAGCAACAGCUGGCAC ....(((...((....(((((...(((((.......(.((((....)))).).....))))).............((((((.........)))))).......)))))....)).))).. (-26.95 = -26.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:51 2006