Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,982,031 – 6,982,187 |
Length | 156 |
Max. P | 0.944963 |
Location | 6,982,031 – 6,982,150 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 96.64 |
Mean single sequence MFE | -36.06 |
Consensus MFE | -31.67 |
Energy contribution | -31.98 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.40 |
Structure conservation index | 0.88 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6982031 119 + 23771897 AGCCAAAUUUGGCAUGUAAAUCCUUUAAAUCAAACAAAAUGCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAAGCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAA .(((.......((.....(((((...................)))))..))((((...(((.(.((.......)).).)))...))))((((((.((((...)))).)))))).))).. ( -36.11) >DroSec_CAF1 51868 119 + 1 AGCCAAAUUUGGCAUGUAAAUCCUUUAAAUCAAACAAAAUGCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAACCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGUAA .(((....(((((((((.(((((...................)))))..))))..(..((..((.....))..))..)))))).....((((((.((((...)))).)))))).))).. ( -33.31) >DroSim_CAF1 51626 119 + 1 AGCCAAAUUUGGCAUGUAAAUCCUUUAAAUCAAACAAAAGGCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAGCCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAA .(((....(((((((((.(((((...................)))))..))))..(..(((.((.....)).)))..)))))).....((((((.((((...)))).)))))).))).. ( -38.51) >DroEre_CAF1 51692 119 + 1 AGCCCAAUUUGGCAUGUAAAUCCUUUAAAUCAAACAAAAUGCGAAGUGGGCGUUUCAGGGCGUAGCAAAUAAACCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAA .(((((.(((.((((.......................)))).))))))))((((...(((.(.............).)))...))))((((((.((((...)))).))))))...... ( -36.32) >consensus AGCCAAAUUUGGCAUGUAAAUCCUUUAAAUCAAACAAAAUGCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAACCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAA .(((....(((((.....(((((...................)))))..(((((....)))))...............))))).....((((((.((((...)))).)))))).))).. (-31.67 = -31.98 + 0.31)
Location | 6,982,071 – 6,982,187 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.79 |
Mean single sequence MFE | -39.94 |
Consensus MFE | -35.88 |
Energy contribution | -36.57 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.07 |
Mean z-score | -1.98 |
Structure conservation index | 0.90 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6982071 116 + 23771897 GCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAAGCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAACUCUUUU---CUCCAUCCGGAUCCCCAAUCCCCAUCACUG (.((((((((.(.((((((((.(.((.......)).).))).......((((((.((((...)))).))))))((....)).....---......))))).))))))))).)....... ( -45.40) >DroSec_CAF1 51908 116 + 1 GCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAACCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGUAACUCUUUU---CCCCAUCCGGAUCCCCAAUCCCCAUCACUG (.((((((((.(.((((((((.(.............).))).......((((((.((((...)))).)))))).............---......))))).))))))))).)....... ( -40.32) >DroSim_CAF1 51666 115 + 1 GCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAGCCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAACUCUU-U---CCCCAUCCGGAUCCCCAAUCCCCAUCACUG (.((((((((.(.((((((((.(.((......))..).))).......((((((.((((...)))).))))))((....))...-.---......))))).))))))))).)....... ( -44.10) >DroEre_CAF1 51732 109 + 1 GCGAAGUGGGCGUUUCAGGGCGUAGCAAAUAAACCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAACUCUUUUUCCCCCCAUUC--AUCCCCAUCCCC-------- ..(((.((((.((((...(((.(.............).)))...))))((((((.((((...)))).))))))((....)).........)))))))--............-------- ( -29.92) >consensus GCGGAUUGGGCGUUUCGGGGCGUAGCAAAUAAACCAAGGCCAAUAAACGUCGGCAGGCGACACGCCAGCUGACAGGCAACUCUUUU___CCCCAUCCGGAUCCCCAAUCCCCAUCACUG ..((((((((.(.((((((((.(.............).))).......((((((.((((...)))).))))))((....))..............))))).)))))))))......... (-35.88 = -36.57 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:50 2006