Locus 2485

Sequence ID 3L_DroMel_CAF1
Location 6,981,169 – 6,981,281
Length 112
Max. P 0.533080
window3852

overview

Window 2

Location 6,981,169 – 6,981,281
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.36
Mean single sequence MFE -17.12
Consensus MFE -15.04
Energy contribution -16.16
Covariance contribution 1.12
Combinations/Pair 1.08
Mean z-score -1.44
Structure conservation index 0.88
SVM decision value -0.00
SVM RNA-class probability 0.533080
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6981169 112 - 23771897
CUACAUCU-------CCUCACUGUUGGGGUCGUUGAAACAUUUAGAGAAAAAUGUGCAAAAAUAAUAUAUUUGACUUUCUGACAGAAUCAAUGGCAAACAAUGAAAUAUAAAUAACAA-A
........-------..(((.((((...((((((((.....(((((((.(((((((.........)))))))...))))))).....)))))))).)))).)))..............-. ( -21.20)
>DroSec_CAF1 51026 96 - 1
-----------------------UUGAGGUCGUUGAAACAUUCAGAGAAAAAUGUGCAAAAAUAAUAUAUUUGACUUUCUGACAGAAUCAAUGGCAAACAACGCAAUAUAAAUAACAA-A
-----------------------(((..((((((((.....(((((((.(((((((.........)))))))...))))))).....))))))))...))).................-. ( -18.00)
>DroSim_CAF1 50795 96 - 1
-----------------------UUGAGGUCGUUGAAACAUUCAGAGAAAAAUGUGCAAAAAUAAUAUAUUUGACUUUCUGACAGAAUCAAUGGCAAACAAUGCAAUAUAAAUAACAA-A
-----------------------(((..((((((((.....(((((((.(((((((.........)))))))...))))))).....))))))))...))).................-. ( -18.10)
>DroEre_CAF1 50840 109 - 1
GUACAU----------CUCACUGUUGGGGUCGUUGAAACAUUCAGAGAAAAAUGUGCAAAAAUAAUAUAUUUGACUUACUGACAGAAUCAAUGGAAAACAAUGCAAUAUAAAUAACAA-A
......----------..((.((((....(((((((.....((((((..(((((((.........)))))))..))..)))).....)))))))..)))).))...............-. ( -14.00)
>DroYak_CAF1 52691 116 - 1
GUACAUCUAUACGAAUCUCACAGUUGGGGUCAUUGAAAC----AGAGAAAAAUGUGCAAAAAUAAUAUAUUUGACUUACUGACAGCAUCAAUGGCAAACAAUGCAAUAUAAAUAAGAAAA
......................((((..((((((((..(----((((..(((((((.........)))))))..))..)))......))))))))...)))).................. ( -14.30)
>consensus
_UACAU__________CUCAC_GUUGGGGUCGUUGAAACAUUCAGAGAAAAAUGUGCAAAAAUAAUAUAUUUGACUUUCUGACAGAAUCAAUGGCAAACAAUGCAAUAUAAAUAACAA_A
......................((((..((((((((.....(((((((.(((((((.........)))))))...))))))).....))))))))...)))).................. (-15.04 = -16.16 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:46 2006