Locus 2482

Sequence ID 3L_DroMel_CAF1
Location 6,979,770 – 6,979,882
Length 112
Max. P 0.500000
window3841

overview

Window 1

Location 6,979,770 – 6,979,882
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.50
Mean single sequence MFE -28.08
Consensus MFE -21.49
Energy contribution -21.33
Covariance contribution -0.16
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.77
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6979770 112 - 23771897
UUUCGUAUUUCCAUUCGCUGGCAUUCAGCCAGCCACGCAAUGCC------AAAAAGUGCAACUCGAAAUGGAGCAAAAGUUCAUAA-AAUUCUGGCUAACAGUCGCCGCAAGA-AAGCUG
((((....((((((((((((((.....)))))).......((((------.....).)))....).))))))).............-......(((........)))....))-)).... ( -25.40)
>DroSec_CAF1 49646 112 - 1
UUUCGUAUUUCCAUUCGCUGGCAUUCGGCCAGCCACGCAAUGCA------AAAAAGUGUAACUCGAAAUGGAGCAAAAGUUCAUAA-AAUUCUGGCUAACAGUCGCCGCAGGA-AAGCUG
....((.(((((....((((((.....))))))...((..((((------......))))..........((((....))))....-......(((........))))).)))-)))).. ( -27.60)
>DroSim_CAF1 49386 112 - 1
UUUAGUAUUUCCAUUCGUUGGCAUUCGGCCAGCCACGCAAUGCA------AAAAAGUGUAACUCGAAAUGGAGCAAAAGUUCAUAA-AAUUCUGGCUAAUAGUCGCCGCAGGA-AAGCUG
..((((.(((((....((((((.....))))))...((..((((------......))))..........((((....))))....-......(((........))))).)))-)))))) ( -26.50)
>DroEre_CAF1 49592 107 - 1
UUUCGUACCUCCAUUUGCUGGCAUUUGGCCAGCAAAGCA-----------AAAAAGUGUGACUCUAAAUGGAGCAAAAGUUCAUAA-AAUGCUGGCUAGCAUUCGCCAACUGA-AAACGA
..((((..((((((((((((((.....))))))...(((-----------......)))......))))))))....((((.....-((((((....))))))....))))..-..)))) ( -29.30)
>DroYak_CAF1 51242 120 - 1
UUUCAUAUCUCCAUUUGCUGGCAUUCGGCCAGCCACGCAAUGCACAAAAAAAAAAGUGUAACUCGAAAUGGAGCAAAAGUUCAUAAAAAUUCUGGCUACCAGUCGCCGCUAGAAAAACUG
........((((((((((((((.....))))))..((...(((((..........)))))...))))))))))................(((((((...........)))))))...... ( -31.60)
>consensus
UUUCGUAUUUCCAUUCGCUGGCAUUCGGCCAGCCACGCAAUGCA______AAAAAGUGUAACUCGAAAUGGAGCAAAAGUUCAUAA_AAUUCUGGCUAACAGUCGCCGCAAGA_AAGCUG
........(((((((.((((((.....)))))).((((.................)))).......)))))))...................((((........))))............ (-21.49 = -21.33 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:36 2006