Locus 2480

Sequence ID 3L_DroMel_CAF1
Location 6,979,027 – 6,979,147
Length 120
Max. P 0.716922
window3837

overview

Window 7

Location 6,979,027 – 6,979,147
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.92
Mean single sequence MFE -34.66
Consensus MFE -29.47
Energy contribution -29.71
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.39
SVM RNA-class probability 0.716922
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6979027 120 + 23771897
GCUCAUUGAUUGCCAAUCAACUGCAAUCAAAUGGGUUUCGUUCGGCCAGCUUUAAUUCCUGGCUUUAAUUCGGAUUUCUUGCCGCACUUCUGUUGCCAAGCUGAUAACGGGCUUUUGGCC
(((((((((((((.........)))))).)))))))((((...((((((.........))))))......))))......((((....(((((((.(.....).)))))))....)))). ( -30.70)
>DroSec_CAF1 48905 120 + 1
GCUCAUUGAUUGCCAAUCAACUGCAAUCAAACGGGCUUCGUUCGGCCAGCUUUAUUUCCAGGCUUUAAUUCGGAUUUCUUGCCGCACUUCUGUUGCCAAGCUGAUAACGGGCUUGUGGCC
((((.((((((((.........))))))))..))))...((((((..(((((.......))))).....)))))).....((((((..(((((((.(.....).)))))))..)))))). ( -33.30)
>DroSim_CAF1 48643 120 + 1
GCUCAUUGAUUGCCAAUCAACUGCAAUCAAAUGGGCUUCGUUCGGCCAGCUUUAAUUCCAGGCUUUAAUUCGGAUUUCUUGCCGCACUUCUGUUGCCAAGCUGAUAACGGGCUUGUGGCC
(((((((((((((.........)))))).)))))))...((((((..(((((.......))))).....)))))).....((((((..(((((((.(.....).)))))))..)))))). ( -35.70)
>DroEre_CAF1 48855 120 + 1
GCUCAUUGAUUGCCAAUCAAGUGCAAUCAAAUGGGCUUCGUUCGGCCAGCUUUAAUUCCGGGCUUUAACUCGGAUUUCUUGCCGCACUUCUGUUGCCAAACUGAUAACGGGCUUUUGGCC
((((((((((((((......).)))))).))))))).......((((((.......((((((......))))))......(((.....((.(((....))).)).....)))..)))))) ( -38.70)
>DroYak_CAF1 50501 120 + 1
GCUCAUUGAUUGCCAAUCAAGUGCAAUCAAAUGGGCUUCGUUCGCCCAGCUUUAAUUCCCGGCUUUAAUUCGGAUUUCUUGCCGCACUUCUGCUGCCAAGCUGAUAACGGGCUUUUGGCC
((((((((((((((......).)))))).)))))))..((((....((((((......((((.......)))).......((.(((....))).)).))))))..))))(((.....))) ( -34.90)
>consensus
GCUCAUUGAUUGCCAAUCAACUGCAAUCAAAUGGGCUUCGUUCGGCCAGCUUUAAUUCCAGGCUUUAAUUCGGAUUUCUUGCCGCACUUCUGUUGCCAAGCUGAUAACGGGCUUUUGGCC
(((((((((((((.........)))))).)))))))...(((((..((((((........(((.................)))((((....).))).))))))....)))))........ (-29.47 = -29.71 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:32 2006