Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,978,295 – 6,978,400 |
Length | 105 |
Max. P | 0.551795 |
Location | 6,978,295 – 6,978,400 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.40 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -19.81 |
Energy contribution | -21.62 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.08 |
Mean z-score | -1.62 |
Structure conservation index | 0.72 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6978295 105 - 23771897 AUCUGGU--------AGCUAGUCUAGAAUUUAUUGGACAG------CAUCAAAGAGACGCCUUC-UCAUGCGAAUUCAAAAGUGUAUACCAUAUUUUGUAAGCAUACACAUUAUAUGUGA ...((((--------.(((.((((((......))))))))------)))))..((((.....))-))((((.....((((((((.....))).)))))...)))).(((((...))))). ( -22.60) >DroSec_CAF1 48167 119 - 1 AUCUGGUGCUUUCACAGCUAGUCUAGAAUUUAUUGGACAGCUGGAGCAUCAAAGAGACGCCUUC-UCAUGCGAAUUCAACAAUGUAUACCAUAUUUUGUAAGCAUACACAUUAUAUGUGA ...((((((((...(((((.((((((......)))))))))))))))))))..((((.....))-))((((.....(((.(((((.....))))))))...)))).(((((...))))). ( -32.40) >DroSim_CAF1 47910 119 - 1 AUCUGGUGUUUUCACAGCUAGUCUAGAAUUUAUUGGACAGCAGGAGCAUCAAAGAGACGCCUUC-UCAUGCGAAUUCAACAAUGUAUACCAUAUUUUGUAAGCACACACAUUAUAUGUGA ...(((((((((....(((.((((((......))))))))).)))))))))..((((.....))-)).(((.....(((.(((((.....))))))))...)))..(((((...))))). ( -24.70) >DroYak_CAF1 49718 120 - 1 AUCUGUUGUUUUCACAGCUAGUCUAGAAUUUAUUGGACAGCUGGAGCAUCAAAGAGACGUCUUCCUCAUGCGAAUUCAAGAGUGUAUAGCAUAUUUUGUAGGCAUGCACAUUAUAUGUGA ..((.(((..(((.(((((.((((((......)))))))))))..((((....(((........))))))))))..))).))......((((((..(((........)))..)))))).. ( -31.00) >consensus AUCUGGUGUUUUCACAGCUAGUCUAGAAUUUAUUGGACAGCUGGAGCAUCAAAGAGACGCCUUC_UCAUGCGAAUUCAACAAUGUAUACCAUAUUUUGUAAGCAUACACAUUAUAUGUGA ...((((((((...(((((.((((((......)))))))))))))))))))................((((.....((((((((.....))).)))))...)))).(((((...))))). (-19.81 = -21.62 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:30 2006