Locus 2474

Sequence ID 3L_DroMel_CAF1
Location 6,975,484 – 6,975,602
Length 118
Max. P 0.875869
window3821

overview

Window 1

Location 6,975,484 – 6,975,602
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.54
Mean single sequence MFE -20.32
Consensus MFE -15.58
Energy contribution -16.16
Covariance contribution 0.58
Combinations/Pair 1.04
Mean z-score -2.03
Structure conservation index 0.77
SVM decision value 0.89
SVM RNA-class probability 0.875869
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6975484 118 + 23771897
UCAGUCGCAGCGAAACAAGUACGACUUUUCACUAAAAAAGCAAUAAAUGCAAACAUGUAGAAAUUAAUUAAAAUUGGCUACAAAUUUGCAUGUGACCCCCAC--ACACCCACACCCCUCG
...(((((((.((((..((.....)))))).)).............(((((((..(((((.((((......))))..)))))..))))))))))))......--................ ( -21.40)
>DroSec_CAF1 45388 118 + 1
UCAGUCGCAGCGAAACAAGUAUGACUUUUCACUAAAAAAGCAAUAAAUGCAAACAUGUAGAAAUUAAUUAAAAUUGGCUACAAAUUUGCAUGUGACCCCCAC--ACACCCACACCCCUCG
...(((((.............((.(((((......)))))))....(((((((..(((((.((((......))))..)))))..))))))))))))......--................ ( -21.50)
>DroSim_CAF1 45178 120 + 1
UCAGUCGCAGCGAAACAAGUAUGACUUUUCACUAAAAAAGCAAUAAAUGCAAACAUGUAGAAAUUAAUUAAAAUUGGCUACAAAUUUGCAUGUGACCCCCACACACACCCACACCCCUCG
...(((((.............((.(((((......)))))))....(((((((..(((((.((((......))))..)))))..))))))))))))........................ ( -21.50)
>DroEre_CAF1 45321 93 + 1
UCAGUCGC----------------------ACUAAAAAAGCAAUGAAUGGAAACAUGUAGAAAUCAAUUAAAAUUGGCUACAAAUUUGCAUGUGACCCCCGC--A---ACACACCCCUCG
...(((((----------------------(........((((...(((....)))((((...(((((....)))))))))....)))).))))))......--.---............ ( -15.00)
>DroYak_CAF1 46670 118 + 1
UCAGUCGCAGCGAAACAAGCAUGACUUUUCACUAAAAAAGCGAUAAAUGCAAAAAUGUAGAAAUUAAUUAAUAUUGGCUACAAAUUUGCAUGUGACCCCCAC--ACACACACACCCCUCG
...(((((.((.......)).(((....)))........)))))..(((((((..(((((.(((........)))..)))))..)))))))(((.....)))--................ ( -22.20)
>consensus
UCAGUCGCAGCGAAACAAGUAUGACUUUUCACUAAAAAAGCAAUAAAUGCAAACAUGUAGAAAUUAAUUAAAAUUGGCUACAAAUUUGCAUGUGACCCCCAC__ACACCCACACCCCUCG
...(((((.((.......))..........................(((((((..(((((.((((......))))..)))))..))))))))))))........................ (-15.58 = -16.16 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:16 2006