Locus 2471

Sequence ID 3L_DroMel_CAF1
Location 6,974,232 – 6,974,347
Length 115
Max. P 0.596493
window3812

overview

Window 2

Location 6,974,232 – 6,974,347
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.21
Mean single sequence MFE -18.73
Consensus MFE -2.02
Energy contribution -2.66
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.11
SVM decision value 0.13
SVM RNA-class probability 0.596493
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6974232 115 + 23771897
CAAUCUUGAUUUAAAAUCAUACAAAAUGUUUGCACAUUAUAUUCACGUUUAAGGGUACUGACUUACGGAUAAGUCAGCACU-----UCUGAAAAUAACUAUUGAUUUGCUUACAUAAAAG
......((((.....))))......((((..(((.((((........((((..(((.((((((((....)))))))).)))-----..)))).........)))).)))..))))..... ( -24.43)
>DroSec_CAF1 44182 101 + 1
CAAUCUUGAUUCAAAAUCAUACAAAAUGUUAGCACAUUCUAUUCACGUU-------------------AUAAGUCAGCACUUCAAUUCUGAAAAUAACUAUUGAUUUGCUUACAAAGAAA
...((((......((((((.....(((((....)))))........(((-------------------((...((((..........))))..)))))...)))))).......)))).. ( -12.32)
>DroSim_CAF1 43945 101 + 1
CAAUCUUGAUUCAAAAUCAUACAAACUGUUUGCACAUUCUAUUCACGUU-------------------AUAAGUCAGCACUUCAAUUCUAACAAUAACUAUUGAUUUGCUUACAUAGAAA
......((((.....)))).................((((((.......-------------------....((.((((..(((((.............)))))..)))).)))))))). ( -10.72)
>DroEre_CAF1 44114 120 + 1
CAAUCUUGCCUCAAAAACAAUCGAAAUGUUUACACAUUUAAUUCACGUAUAAGGGGAUUGACUCGCUGAUAAUUCAGCACGUAAAUUCUGUAAAUAACUUUUGAUUCGCUUAUAUAGAAA
..................((((((((((((((((.....((((.((((....(((......)))(((((....))))))))).)))).))))))))..)))))))).............. ( -23.30)
>DroYak_CAF1 45480 120 + 1
CAAUCUGGGUUCAAAAUCAGCCAAAAUGUUUGCACAUUUUAUUCACGUUUAUGGGGAUUGACUCACUGAUAAAUCAGCACGUAAAUUCUGAAAAUAACUAUUGAUUUGCUUCUUCAGAAA
...((((((....(((((((..(((((((....))))))).((((.((((((((((.....))).((((....))))..)))))))..))))........))))))).....)))))).. ( -22.90)
>consensus
CAAUCUUGAUUCAAAAUCAUACAAAAUGUUUGCACAUUCUAUUCACGUUUA_GGG_A_UGACU__C_GAUAAGUCAGCACUUAAAUUCUGAAAAUAACUAUUGAUUUGCUUACAUAGAAA
...(((((.....((((((.....(((((....)))))...................................((((..........))))..........)))))).....)).))).. ( -2.02 =  -2.66 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:07 2006